Gene detail

Detailed information of c0449.g020.t1 in Palythoa umbrosa

Genomic Location: c0449:183109...202761
NR annotation: XP_031549703.1, uncharacterized protein LOC116287202 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0449.g020.t1

ATGCGAAAATTGAAGTGGAAAGAAGCACGATCTATGTGTGTCGATTTACAGGCTGACCTCGCAAGCATCAGCAATCAGAAAGAGCTGGATTTCATAAAAAAGCAACCCTATTTGAAAAGGGGAGAATTCTGGATTGGATTAAATGATATAGGTAACGAGGGTAACTTCAAATGGACTGACGGCACAACCTATAAATTTAAGAACTGGCACGGCAGTGGACCGTCAGGAGATAGCTTTGAGAACTGTGTTGAAATGTATGGCAAGTACGCAAAGTGGAACGACAATAGATGCGAAAAAGAGTTGTATTTAACTTGCAAGAAAACAAAACGTGGTCCTCTGCCTTCACCTGTTCCGCTAACTACAACTGGAATAATTAAACAGGACAAAACACCATCAAAAACACCGGAACCAAACGTGCCAGCACGAATAATCGATCGATCACCCAGCATTGTTACTGCGATCGAAaaaaaaaaGATTGAAATCCTTTGCACTGCGCGAGGTAACCCGAGACCAACAGTCACCTGGAAGAGGAAGGACGGACAGTGGCTGAGAGGACAAGTTTCTCGTGCATACGTAGGAAGTTATTACAAAACAAGTACTTTTACAATATCCCAGGTTCAGACGAGAGACGCTGGAGTGTATATCTGTACTGCTACGAACAGTTTGAAGCGGATTGAAATAGAAATATTGCTCTCATTCAAAGAGAAAGGATCAGTTCTTACACAACCTGAGAGTCTCGATGAAACACTAGACAAACCCGTCGTTATTACATGCCTGGTGAGTGGTTATCCGCTGCCAACAATACAATGGAGAAAGGAAGGGAATGGTGTCACCAATACCAAAGATGGTCGCATCAAGATTTCAAACATCAAAACAAACGATACAATGCAGCTGAGTGTTCTGAATATAACAGCTGTTACTCGGCCTGATACCGGAACGTATTTTTGCGAAGCTTCCAATGTTCTGGGTGATTTAAAGAGAAAGTCAGAGCTTCTCGTACTTGaaaaaCCTGATAAACTGGTTGTAAATGCCACGCAACATCACGATTCTCTAAAGCTCACCTGGCTGGTGACCTTTGATGGCAACTCGCCTATCACTCAATTCTCAGTCCAACATTTTGATCCCCACGGGTCGAACACGTCACATATCCTGTCGGCAGAGCAGAACCAGATCACCATAAATAAAACAAAATTAGGAGCCAGGCATGTTTTCATCGTCGCAGCTGTTAATGCTATAGGCAAAAGTGACCCAGTGACAATTGCCTTCACTACTCGAGCTCCAGGCACTAAGCTGGCCACTGGTGCTTTTCCTGTTGCTGCAGTGACGTCAACGATGATTATATTTGTATTAGTTGCAGTGGTTGTGACTGCTCTTCTATTGTGGAGAGTGCGAAAAAGACGATACTCGAGgaagacgataaaagaagaagaaAAAGTATCCCATATATCCTTGGAGCTTGTTGCAGAGgctgagaatgaacatgaaccaaaacCGGAGATAACCCAACCAGTTAACGCTTTGGATTTGAATGAGCTCAAAGCATATTACTCCAGAATGAAAGCTGAATCTCTGTTTGGTGTACAATATAAGATGACAACGAAAAAGGTAAGTCTTAGTACAGGCTTGAATGATGAGAGGGACGAAACTGACTTAATATGCTCAGATGACCACTCACGTGTGATACTGTCACGTGACCCGCAGGTGGAGGGCTCAGACTACATCAACGCAAACTATATCGATGGATACAATCATCCAAACCGCTTCATCGCAACCATGGGTCCAAAACCTGAAACTGTGAACGACTTTTGGAAGATGGTGTGGGAACAGAGAGCAAGTGTAGTTGTGATGCTTACACAAACTATGGAAAAGTGCAAGGTGAAATGCCATCAATACTGGCCAAACAAAGGAGCTACAATGTATGGCGATGCTGTAGTTGAGCTGATGAGTGTCCAAGAAACTCTTAATTTTGAGATCAGGAGGTTGCAAATCTCAATGTATGCAGAACCAAACGAAGAAGCGCGGACGGTGACACATTACTATTTTACGGCCTGGCCCGACCATGATGTTCCGGACAATGCTACAGGGATATTGGATTTACGACGCCAAGTTAATGCAGCAATTTTATCTCAAGATACCGGGCCAATCATTGTGCACTGCAGCGCTGGAGTGGGCCGTACAGGAACATATATTGCAATTGATACCATTTTAAACCGAATCAGGGAGGAaggaaAGATGGACGTGCCTGGGTACATAACGTACATGCGTGGTCAGCGAGGGGATATGGTTCAGAATGAGTCGCAGTACAAATTCATCCACACCGCTATTCTCGAAGCTGTGGCGTTTGGCGATTCAGTGATATCAGTCGAGGATCTGCGCGTTGCGGTCAGGAAATTTAATGAAAAAGATCGGTCAAGTGGCAAAACGCCCCTTGAAATGCAGTTTGAGTTACTTGATGGTGTGTTTCCCGAAAACACAAATGACAATCAGGCAGCTGGTGGTAAAAAGGATGGATCGAAGGAAGTATCTGCAGATGTGGTTCCTTATGCTTTTAATCGCGTGTGGCTCAGTCATACTGACCCTGACAAAAGCACGGCATACATCAATGCCAGTTTCATAGGGGGATACCACAGTAAAAAAGGATTCATTGCCACTGATGCGCCATTACCTGACACAGTCAATGATTTCTGGAGGATGGTCTGGGAGCGCAACGTGCGAACTATTGTCATGATCGCTAAACTTAACGAGAAATACAAAGGGTCGTCGATCAACCGCTATTGGCCAGAGAATGACACTGATGTGTTTGGTAGTTTCACAATTACATCTCTGAAAAAAGAAACCAAAGGCCCTTTTATCGATCGTGAACTTGAAATAAAAGATTACAAGACAGGAGAGATTAGGAAGGTTCGTCACTTCCATTTCTTCCGTTGGCCGTTACTAACCTACCCGGCAAACTGTACCATGGTGTTGGATTTGATTCACGACGTTCAGACGACACAACAACAAACTGGTATGTGGCCAATCGTCGTACACTGCAGTGATGGCGCAGGGCGTACAGGAGCATTTTGCTGTCTGTACATCACTCTTGAGAAACTAAAAGCTGAAGGTGTAGTGGATATCTTTACAACGGCGAGGTTACTCAGGGCACAGAGACCAAAAATGATATCAAGGCTGGATCAATATCGGTTCTGTTATGACGCTGTAATCGCTTACTTGGACTCCTTCGACCAGTACAGCAACTTTGAAGTGCAGATCCACAAGAAACGTTTTTAG

Transcript

c0449.g020.t1

Protein

Uniprot

Uniprot term	Description
P18052	Receptor-type tyrosine-protein phosphatase alpha OS=Mus musculus OX=10090 GN=Ptpra PE=1 SV=3
P18433	Receptor-type tyrosine-protein phosphatase alpha OS=Homo sapiens OX=9606 GN=PTPRA PE=1 SV=3
P23469	Receptor-type tyrosine-protein phosphatase epsilon OS=Homo sapiens OX=9606 GN=PTPRE PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan