Gene detail

Detailed information of c0456.g013.t1 in Palythoa umbrosa

Genomic Location: c0456:185981...211763
NR annotation: XP_022808833.1, uncharacterized protein LOC111345816 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0456.g013.t1

ATGAGGCTGTGGCAGTTTGCCGTCCACAGTTTGTGGTGTCTTATCTTCTCTGAGGTTTTCGCTCAGTCAACAGCACAAGTTGTTACATTTCCACGTACTTTCACCGGATCGCGTTCTGTGCGAGTTCTTGCTTCGGTCGGACATGGAGAGGTTTTCTCTAAGGTTCACGATCCCTCTGTCTTATGGGCCGAGTCTGTTACTACGAGCGGGTTTCGGGTGTGTGTGCAGGAATCTGGCAGCGGAACAAACGGCTCCGTTGTAATCAACTGGTTGGCATTTCAGGACACTCCCTCGGGATATCTGAGCGGTTCTGCCTCCTTTGGTTTATTCACAAGTGGAACTACATGCAAAAGGATAAATTTCCCACAACTCTTCCCTAAAGTTCCCAGGGTGATCGCTTCTTCGCGTCATGCAACTGTGAATCGACCCGAGGATGCCATGAACCTGTGGCTAGAAGATGTCCATCGCGATTACTTTACAGTTTGTCTGAAGGAGGTCAAGAGCTTTGATGGAAAGCACAACAACATTGAAGTGGACTGGCTGGCCTTTGTTAATGGTGGTGTAAACATTACGTTTAGTGATAACATTGTGTTTCGAAACTTAGCCGCTCCACTAGAGAAAGACAACTTTGCTTACTGTCAGATTGTCAATTTCACCAACAGCTTTTATGCAGCACCCGTTGTCATGGTAACCGCCAATCACGTGTATGATAGTAACAATGCCTACTCTATTAAACCAGAGAACAATGCTATCAGTTGTTGGATTGAGGACATAACAAAAGAAATGTTCCGAGTATGTTTAAAAGATAATGCGGGCCTGGGGTCACAGCACGACCCCATTCAAGTGGATTACATCGTGTTAGGAGACCTGGATCCTTGTCTGAACGTCACGTGTGAGTATTACGCTGTCTGTAAGGCTTTCGGACCTAGGGACGCTCGTTGTgtgtgtgTTGTTCAATGTCCGTCGTACGACGAGCCTGTGTGTTCATCAAACGGTACAACTTACGACAATAAGTGTGTCTTTGAGCGAGAAATGTGTCTACTGAAAGCCAATCACACCTTGTATCATCCTGGCAGTTGTACTGGTTTTCCCATGGAGAAAGGCCGGCGCACCCTCAAACACTTACCATCTTGGTCTGAAGTGATTTGTTCAACCATCGTCTTCTCCCCGCAAACATTCTACCCTGACAAACCTGTACATGTACAGGCAACTGTCAATCATGTTAACTCTTCTGACTCCTCCCATGTGCATGAGGCCGCGGTGGTTTGGGTAGAGAAAGTCCTTGATACACAGTTCAGGGTGTGCGTCACAAAGGCAGGTCGCAATGAGGATCACAGTCCAGGAGGATTTGCCACCGTTGATTGGATGGGGTACCAAGGAGCGCCCGAAGGGGGTGTGGCCGGTGAGATGGACATACCACGCTGGTGGACTGGAACTACCTGCAGGACTGTTAATCTTCCAAGGGGCAAGTTTACCGTCAAACCAACCGTACTCCtaactgctgagcatgaacatcacgggctcaagcatgacgcagctactgtgtgggcccaagacataactaccaactcatttgatatttgtatcagagagcttcagaactttgacggagtccacgacaatgtccatgtgAACTGGATAACATTCGAGTCACTTCATCGTCCCTTGTTCAGCGAACATGGCTCTGTACACTTCCCAAATACCGGTCTTCTACAGCAAAGCCTTAACTTCGCTTTCTGCAAGGATGTACATTTCAGCGTGCCGTACAACGATACCCCTGTCGTCCTTATAACAGCAAACCACTCGACTGGTGGTGGAAACCTTGCCCCAGTTTACAACGCGATATCGAGCTGGGTCGAGTACATCAACAAAACTGGTTTCCGCACCTGCGTGAAGGAATTCTACGTCAACAAATACGATCCGTTGTCTGTCTCTTACGCCGTTCTTGCAGATATCTGTCCTCCCGAGTGGAGCTACTTCAATGGTTCCTGTTACTACACCAGTTCTTTCTGTAACTCCTGGAGTCGAGCGGATTCAACATGTCGGGACCTGGGTGCTAACTTAGCCTCTGTTGAAAGCCAGGAAGAAAACGTGTTTTTACAGCGACGACATAACGGAGCAATGGCTTGGATCGGGCTCAACGATATCGCCAGTGAAGGGAACTTCAGATGGATGGACGGTTGTAAGGGGAGATACAGGTTCTGGGCCAAGAACCAACCCAATAACATGAACAACCAGGATTGTGTTCATACACTTGGTTTTACACATGGCTACACATGGAATGACGTGTCGTGTTCCAACTGCAACAACTTCACCTGTAAGAAAGATTACAATGAATGTGTCAGCAGCCCGTGTCAGAATGGTGGAAAGTGTGTAAATGAGATCAGAAATTACACTTGTGTTTGTCCTTCATCTCACCTTGGAAGAAGATGTGAAGAGTACAATGAATGTGTCAGTAATCCTTGCAAAAATGGAGGAACATGTCAAGATGGCAAGGGAAACTACACATGTGCCTGCCCTGCCAGGCATAAGGGACGACAATGTGAAGAGTACGATGATTGCTACAGTTCTCCCTGTTTGAACGGTGGAACCTGCGTTGACGGAGTTAACTCGTACACGTGCTCATGCCCGAGCCCGTATGGGGGGTCGCGTTGCGAAGTGGCACTTGGTTCATCTTGCAAGCAACTCAAGACAGCGGGACACAGCTCAGGTAATGGCGCCAACTACTGGTTGAGAGCACAGGGACAATCCGTCAAGGTCTACTGTGACATGACTGAAAATGGCGGAGGATGGACGCTGATCGCTCGCTTCTCAAATAACGACCGTCAGAACTGGATGAGAGACGACGGTAACTGGTGGTATGACCAGCGGTCTTCACAGGGCCAAACTACCAACCCTTCTGTCAATTCCGATATGGTATCGCCCGCCTTCTGGTTAGTTACTGGTAGCGAGTTTAAGATCACACGAAGTGATGACAGTTCCCATACTGCTTTGCTGCGAACCACCAGCAATTGTCTTGGGGGAAGGACTTTCCGTTCAAAGATCCGCAGTTTTGGTCATTTCACTGGCTGCACGAGTTGGGCCAGCGATCAATGTCGTGGCAGTTGTAGAGTCACTTATGGGGGTAGTTACCAGTCCACTTCTGGGTTCAATCAGGCTCATTGCAGCAGCGGAATCCAGAGCAGCTCCTACATTGGGTTCTGGTGCGATTGGAGCAGTGGAGACGGTGCGGTGCTGATGATCGGAGGAGGGGGAAGTGGGTGTGGCCGGGCTGATCATGGAATCGGTATCACTGAAGCGAATGCTGCAAGTTTTCAACATTGCAGTAGTGATTCAGGAGAATTAGACTTTGGGAATAATGCAGCAAGTGGGTCTACTTCTTACTCTTTGAACCTGTGGGTGCGATAA

Transcript

c0456.g013.t1

Protein

Uniprot

Uniprot term	Description
Q6ZS10	C-type lectin domain family 17, member A OS=Homo sapiens OX=9606 GN=CLEC17A PE=1 SV=2
Q8CJ91	CD209 antigen-like protein B OS=Mus musculus OX=10090 GN=Cd209b PE=1 SV=2
Q91ZW7	CD209 antigen-like protein E OS=Mus musculus OX=10090 GN=Cd209e PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan