Detailed information of c0660.g005.t1 in Palythoa umbrosa

Genomic Location: c0660:63775...74635
NR annotation: XP_020611228.1, E3 ubiquitin-protein ligase RAD18-like isoform X2 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9QXK2E3 ubiquitin-protein ligase RAD18 OS=Mus musculus OX=10090 GN=Rad18 PE=1 SV=2
Q9NS91E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens OX=9606 GN=RAD18 PE=1 SV=2
P33288Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=uvs-2 PE=3 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|UBZ

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02037SAPSAP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004580FamilyDNA repair protein Rad18, fungiInterproscan
IPR039577FamilyE3 ubiquitin-protein ligase Rad18Interproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR003034DomainSAP domainInterproscan
IPR006642DomainRad18, zinc finger UBZ4-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0006301Biological Processpostreplication repairInterproscan
GO:0006513Biological Processprotein monoubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0097505Cellular ComponentRad6-Rad18 complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10627RAD18; E3 ubiquitin-protein ligase RAD18EC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

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