Gene detail

Detailed information of c0676.g003.t1 in Palythoa umbrosa

Genomic Location: c0676:15113...55029
NR annotation: XP_048586068.1, ral GTPase-activating protein subunit alpha-2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0676.g003.t1

ATGGAAACCTTGACCCGGGTTCTGTCGAGGTCAGTTTATGGACTTGATCTTGGAGATCTTCCACTTGAGAGGCTTAGTGAACAGAAACGAAAAAGAAGGAAACACCAAATCTTAGAAAAACCCAACTTTAATAGAACTTCTTTTACACGATGGAGTAAAATGGATGTAAGTACTCCTAATCCAGTCCCAGTAAGTGCTGAACAACAAAACTTAAGCAAAGGTGGAAGCCCCATCTTACCAAAGGCAAGGAAACCAATGGTTACCTCAACGTCAGCTGGAAGTGGTGTCCATCTCCCTACAGTTGGACAAAAACCATTGAGAACATTCTCAAGTGCTGGGAGTGCGTTTCAGAGTACTGTTCCATCTGAAAACCACACAGGAGGTTCTCCTACTGTTGCTGCAGGTTCAGCGACAGCTTCGAATTCTGAGGCTGCTGGACAGCTTTTGACTTCAACAAGGGGTTCCGGGATTTCAGACAAGGAAAGCTCTTCACCTGCAGAAGCTCATACATCAAGAGTGATTGGTCGATTTTCAAGTGATagtgatagtaatGACAGTGTTGATACCAGAACTCCGAAAGATACAGAATCAGAAGTGAGCATAGGTAGTAGTTTAAGTAAGCAGGAGGGCTTGAATGATACAAAGAGACCATCTCCATTACCGAAGCAAAGTTCAGATGATCCAGACAGTTTCATGGCTAAGACCATGGCATGGAACAGCTCAAGTATAGACAATGAATTATTAAGAAGAATTAGTGAAACAAGTATAGAATACACATCACAGCTCCGCCATGGATGGGATTCGATGAGTAGTGATGGTACAGTAGGCACTGACCAAACATCAGCTCCAGCTGGCGATGGAGACACACTAAGTGAAACAACAGTTAGGGCGTCACTTGCATCATTACCAAGAGACAGTGACTTGGGGGATGATTCATCAGAGCAAAACGGGAGCAGGTCCTCCCCTGATCTCTCTGGTCGAGATTCTCCAGTTCCCCGGTCTCGCAGTCCGTCTCCACCTGCAATGCTGCAAGTTAGACGGGATGAACTTTTAGAATTTGTTGAAGGCAAAgattatagtgagtatgatgatgatgatgatgaagacgaagaggatgatgatgaggaggaggaggaggaagaggaggaggaACCCAGTGTGTTGGCTGGTGGCACTAGGGAGGGGTGGGGCACAGTGGCATCTGCAGTACTGTGGAGAAGAATGCTGGGCATTCTTGGCAATTTAAACAAAATCAAAGTACCGTCAAACCATGCTAAAGTGTTTGAATGCCTAACTTCAATCTGGAACATGCTGGCCAAGGTCCGAATGAATCAAGGCATCTCATTGGATAATAAATCAACACCACCATTACCTGCACTGCTGCCTCCACTTCAGTTTTTTGCGACGTGGGTCTTTGAGGCGTGTTCGATGTTAATGTCAACCAAGTTCAAGAGTGGTCGATTGCTGGCATACAACCTGATGTGTACAATGACTGTCAGACATCAGGACTCTGTTCTCTCCCAGGAATACCTCACTCACTTTTACAGACTACTTCATATTGGTCTCACTGGAACAGAACAGGATATAAATTCTGCCATTATCAGCAACTGTTCTCATTTCTTCTCCATGGTTTTGCCAAGCTCCAGCCTTCTCATTTTGGATTTTATACAAGCAGTGAACCTCATATTTATCCACCAGAGCATGGAGCTACCAAGGGCCGAAGCTATCACGCTGGTAGGTTCCTTGTTGTGTTATCCAAACAGCTTTGGTGACATGCCGTTACACCAACCAGGACATCAGACCAATGAGTATCAAGCGACTAGTAAGAGCCAGGATATCAAAGAGAAGCTGATTAGTGCATTGTTGAGATCGGCAAAACTGGATCCATCTTGTACAGCAAGGTGTATAGCCCTAAACTCTCTTGGAATATTTGTGGTGGAAGAACTGGTCCACAACAAGGGGCACCAAAAGATTCACGATTGCATCTGTGTCATTCTTGCTTCCATATTATTTCACCACAAGACTATTTGCCATGTCGCTGTTGATCTAATTCACTTGCTGTCGGAGTTCAATGAAGAACTTCAGGCTTTTGATGAAGATTTGCCTGTGAAGATTATTGACggtttGTGCCACACTGTGATGAGCTTGTTACCTGGAGGGGAAATGTCTCAAGTTCAGGATGACAGCAAGATCTTGTCAAAGCTGCTGATGTGCCTTTTAGACTGGACAATACTAGTTCCTATATCCAAACTGCTGGCCAAAAAAGGAGATGAAGACAGAAGTATCATCTCAAGAATTTTTCAGGTTCTCAAAGCTTCTGTGACAAATAAATCGCTGCTGCAGAAGAGACGGAAGTCGCTAAACATTTCCGCTATTATCTGTGGTGATGCCCGCCCTGTCAAACTCGCTCGCATTGTGGATAACACAAAGATGTCTTCCAAGTCTCCACGTAGTCCATCTGTAGGACGGGAGAAAGGTGGTGATATGGAAGATAGTGGTCATCAAATGCCAATGTCATTTGATATTCCAAAAAAACCAGATCCAGTTCGTCTCACTGCTGAAGCGGTGTTGTCACGTTTGCTGAACCATTGGGAGCACTTTCCTCTTGGCGCTGGTTCGTCAAGACTCGATAGCTACGTTGGAGAGCATGAAGACAACCCGAGTGCAGACTGTGACGAGGTGTCACCAGCGATCTTTACCTCTCCTAATCTCCAGTTTTATGTGATGAACGACAGTATGTTGGTATCATTGGTGGAAATTCCTTGTGAGAGCCGAGAAGGTGAACTGAGCGAAGAAGATCCAGTAGGGGCCAAGACACAAGTAAGAATTGTGACACGAGACATGAGTGGCAAGCATGCGTGGGACTTCACCTTGTTCTATGGTCCTAACTCCAAAACAGAAGTCTCGCAATTTCCCTTTAATGGTGTTATTACAAAGGAAGAGGAGGACCCACTTGTTGATTCCGAGAAATGTAGAAAAAGTCCCGATCGAAGGAAACACTCTGGCAGCCCGCTGAAAGCAATGAAAAGTGACAGCGCTCTTTCTCCTGATAGATTGGATGAAGTTTTAGGGTACATTGGAAGCACAAGTAAGGAGTGCGTAATCTTTCCTGATCTGGCGCTGAACGAGCCACAACCCACACCTGAGAACTTAGATGATGCATTGCAGTTATCTGTGATGGATGCCGTTTTGGAGCAACATGATGTCGAACAGAACTTTGCGGGCGGTGGAGGCACAGACGTCAATGTGCCTGCCAACGAGGTTCAGCCTCCCGTGTATGTTGAGCCAGCCTCACCTTTTCAGCTGGGGCGGTGTCTGATCAGTGAGATCGGACTGCTAACGTGGGAGAAGAGAGCAAGAATAGACCTGTTAAAGAGAAATGAAAAATTCCTTCGAGAGTTGAAGAATTTGGACAGCACAAGATGTCGAGAAACCCACAAGATTGCTGTTCTGTATGTGGCAGAAGGGCAAGAGGACAAAAACTCGATAATGTGTAATTCCAGTGGAAGTCAGGCATATGAGGATTTTGTGGCCGGCCTTGGATGGGAGGTAGACCTATCAAAACACACAGGTTTCATGGGCGGTTTAGAGAAGAATCTCTCTACAGGAGCCACAGCGCCATATTTTGCTTCTTCAACTGTGGAGGTCATGTTCCACGTGTCCACACGCATGCCTCTTGCAGCTGATAGCACTGGATTCAACAAGAAGGTTCGTCATCTGGGAAACGACGAGATACACATCGTCTGGTCTGAACACACTCGAGACTATCGTTATGGAATAGTCAACACAGAGTTTGGCGATGTTCTGATTGTTATCTATCCACTCCCAAACCACTTGTTTAGGATACAAATCATTAAGAAACCTATGGTTCCTCAATTTGGGCCTTTATATGATGGAGCTATTGTGGATAGAAGGGTTCTTCCTGTTCTTGTACGTGCAACAGCAGTCAATGCCAGCCGGGCGAAACGTTCTCAGCTCCCTTTATATGAAAGATATTATGAAGAGAGAGCGGAATGCATCAAGAGAATAGTGACAAATCACAAGGAGCACACAACATTTGAGGAGTTTTCCTCCAAAATATTCTACCCAGTTCCTAAATTCCAAAGCAGGCCTGCAACACCAGCAGTATGTTTAGAGGAAACACCAACTAACCCCATTCCACATGTTCAAACCGCCCCAGGCCACTTGACTGACGTGGATAGAAATTCATTTCGACAGCGATCCCAGAGTTCCGTGTTGACACACTCAAGTGCAAAAGATCACAAACTAATGGAAACCGACTTAGCAGCCACGGCCATGTCCCTTCCAGATGGACTGGACCGAGTTGAAAGTAGCGACCAGGAGGGAGCTGCATCATCTAAACATGAAAAAAGACGGGTGTCCCTTAAGTGGCGCAACAAACAGACCAGTACAACTGTTACTGAAGAGAGTGACAGCGAATAG

Transcript

c0676.g003.t1

Protein

Uniprot

Uniprot term	Description
Q6GYQ0	Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens OX=9606 GN=RALGAPA1 PE=1 SV=1
O55007	Ral GTPase-activating protein subunit alpha-1 OS=Rattus norvegicus OX=10116 GN=Ralgapa1 PE=1 SV=2
Q6GYP7	Ral GTPase-activating protein subunit alpha-1 OS=Mus musculus OX=10090 GN=Ralgapa1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02145	Rap_GAP	Rap/ran-GAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035974	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR000331	Domain	Rap/Ran-GAP domain	Interproscan
IPR027107	Family	Tuberin/Ral GTPase-activating protein subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10063	TUBERIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0051056	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25768	RALGAPA; Ral GTPase-activating protein subunit alpha	-	Membrane trafficking	ko04131	deepkoala