Gene detail

Detailed information of c0677.g017.t1 in Palythoa umbrosa

Genomic Location: c0677:121961...135841
NR annotation: CAH3032813.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0677.g017.t1

ATGTCGCTCTTACTGAGCTCAAACAAAGCTGGAGTTCAGTTTGAAGATAAGTGGCATCAGTTAAAACCAACAGTGAACAAACTGTTGAAGCAACAGGCAGTTACCACTCAAGAATGGCAGGACTTGTTCTGGGATGTGCATACAGTTTGTAACTGGGACGAGAAAGGACCACAGAAGGTTTACAAGGCTCTGAAAGATGAAGTTACCATTTTCATCAAACAGGTGCAAGAGagaGTGCTGCGACACCAAGATGACTCATCATTGCTGAAAGCATATATTCAAGAATGGATGAAGTTTTTTACACAGTGTAATTACCTTCCCAAGCCATTTGGTACACTTGAGTCCAACTTGCAAGGGAAAGCTGGGGGCGGATCTAGCAAAAGACCTTCAACAGATGGAATCACAGTTCAAAAGTTAATGTTGGACAGCTGGAATGAAGGTATTTTCTCTACAATCAAGGAACGTCTGCAGTCAAGTGCAATGAAGCTTGTTCACTCTGAGAGAAATGGGGAAGCATTTGAGAGTCAACTAGTGATTGGAGTTCGAGAATCATATGtgAACCTCAGTTCAGATGTGTTAGACAAACTGAAGATTTATAGGGAGCACTTTGAAAAGGCATATCTTCAAGCAACAGAGGATTTCTACAAAACCCAGGCACCAAACTACCTTCAGCTGAATGGTGTTCAAAATTACATGAGATATGCAGAAATCAAACTCAAAGaagaagaacaacGAGCTGTACGATATTTAGAAACCAGGAAAGGCTGCACGTCAGTATCAGTGCTTACAGAATGCTGTGTCACGGTTTTAGTTGGTAACTTTAAAGACACCATCTTGGCAGAATGTCCACAAATGATTGCTGCTAATGAAACAGAAAGGTTATTACTAATGTTTCAACTAATGGACTGTGTGCCTTGTGGAGTAGAGCCAATGATAAGCAACCTAGAGAATCATGTTGTTACAACAGGACTGGCAGATATGAGAGATGCCGCTGAGACAATTACTTCTGATTCGGAGAAATATGTGGAGCAGTTGCTGCACTTGTTTGGTCAGTTCAGTCAACTAGTCAAGAATGCTTTTAATGATGACCCAAGGTTCTTGACTGCACGAGATAAGGCTTTTAAAACAGTAGTGAATGACACAACAATTTTCAGGCTGGACCTACCACAGAAAGGGAAACTGGGAGCTGGTTTGACTGCAAAACAGCAACCGGAGTCACGGTGTCCAGAATTACTAGCAAATTACTGCGACATGCTGTTGAGGAAAACGCCGTATAGCAAAAAGTTAACTTCAGATGAAATTGAAAAAAAGCTCAGAGATGTATTACTTGTATTAAAGTATGTTATGAATAAAGATGTTTTTATGAGATATCACAAAGCTCATTTAACGAGGCGACTTATATTGGATACCTCAGCAGACAGTGAAATGGAAGAGAACATGGTGGAATGGCTAAGGGATGTAGGCATGCCAGCAGATTATATAAATAAACTGGCACGTATGTTCCAAGATATTAAGGTCAGCGGTGATCTCAATGGAGAGTTTAAGAAGGCATATCAAGATAAAGGAGACATTGCAGattgtgtcaatatcaaaatactgaatGCAGGCGCTTGGTCACGCAACTCAGAGCGTATAGCAGTGTCGCTTCCAACGGAGCTTGAAGACTACATACCCGAAGTGGAGGAATTTTACAAGAAGAACCACAGCGGTCGTAAGTTACAGTGGCACCACCTCATGTCAAATGGTGTGATTACGTTTGCCAATAAAATTGGTAAGTTCGACTTGGAAGTAACAACCTTCCAAATGGCAGTGATGTTTGTCTGGAATGAACGGCCACTTGAGAAAATCTCATTTGAAAATTTAAGACTTGCAACAGAGTTACCGGACTCCGAACTGAGAAGGACTCTTTGGTCTCTCATCGCTTTTGCCAAGCTGAAGCGCCAAGTTTTATTGTGTGAGCCGGCTGCTAAGAGTATGAAGGAGTTTCATGATGGCACTAATTTCTGGGTGAACCAAGAGTTCGCTCTGATAAAAAATGGAAAGATACAAAAGAGAGGAAAAGTAAATCTCGTTGGACGACTGCAGTTGTCGACAGAGAAGACCAAGCAGGAAGATAATGCTGGTATTGTGGCCCTGAGAGTCCTAAGAATACAGGAGGCCATCGTAAAAATCAtgaagatgaggaaggtgATTACAAACGCTGCACTACAAACCGAACTTGTCGAGATCTTGAAGAACATGTTTATACCTCAGAagaagatgatTAAAGAACAAATCGAATGGTTGATCGAGCACAAATATCTTAAGAGAGATGAAGAAGACATTAACACGTTTGTCTATCTTGTTTAA

Transcript

c0677.g017.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q93034	Cullin-5 OS=Homo sapiens OX=9606 GN=CUL5 PE=1 SV=4
Q5RB36	Cullin-5 OS=Pongo abelii OX=9601 GN=CUL5 PE=2 SV=3
Q29425	Cullin-5 OS=Oryctolagus cuniculus OX=9986 GN=CUL5 PE=2 SV=3

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888	Cullin	Cullin family	Repeat	Interproscan
PF10557	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001373	Domain	Cullin, N-terminal	Interproscan
IPR019559	Domain	Cullin protein, neddylation domain	Interproscan
IPR016158	Domain	Cullin homology domain	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR036317	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR045093	Family	Cullin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932	CULLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031466	Cellular Component	Cul5-RING ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10612	CUL5; cullin 5	-	DNA repair and recombination proteins	ko03400	deepkoala