Gene detail

Detailed information of c0711.g005.t1 in Palythoa umbrosa

Genomic Location: c0711:85144...93087
NR annotation: PFX15985.1, Eukaryotic translation initiation factor 4B [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0711.g005.t1

ATGCCTTGTGGGCTGGCGGGACAAGCTGAGTTCCTGTGTCACGTTATTTCCAACATGGCGGAGACAGGTGGaaagaaaaaaaagaaagcaaaaggcaagaCGGTAAACCTAAACGAATTCTTGGCCAACGGCAAAGATGATCAGAGAGGTTCGGCGGTCACTCATGCGGCTGCAATGTATTCCAACAGAAGCATGAGTTGGGCAGATGAAAGCGAAGACCTCAATACTCAAGTGGATACATCCTGGCCTAACTATTCAAATGCAGCTGAGACCTTAATGCGAGCTGCTCGGGACAGAGCTGCCTTACCCAGTGCCCCAAGGGCTGCCCGCGGTCCAGATATTGATATGAGTAAACTCCCTAAAGAACCTCCTTTTACAGCTTTCCTTGGGAATTTACCTTATGATGTGGATAAAGAAGATATTCTCCAGTTTTTTCATGGAATTAAAGTGACCGAAGTGCGACTTCCCCATGACCAAGGCGGAGGCAGACCAAAGGGTTTTGGCTATGCAGAGTTTGAAGATTTGCCATCTCTTATGAATGCCCTGTCACTCAACAATGAGCAACTTAAGAACAGGAGGGTACGAGTGGACATTGCAGGCCACCAGCAACAGCCAGAGAGAGAAGGAGGGGACAGAATGTCAAGAGACTTAAGAGATCAGGGACCAGATCGTACTGATGGAGATTGGCGCACTGGCCCCGATACATCTTTCACGTCATCAAGACCTGGACCCCCTGGTCGATACGGGGATCAAAATGGAGGTTTTGATAGGGACTTTGGGGACAGAGGATTTGATCGTGaTcggggatttgatcgtgatcgaggatatgagcaagaccggggatatgaccgtgataggggatatgatcgtgatagggggtatgaccgtgaaaggggatacgatcgtgataggggatatgaccgtgatcaggggtatgaccgtgatagaggatatgatcgcgatcgaggctttggtcgtgatcaagggtataatcgatatggaggaAGAGACCAAGGATATGGTGAAGAGCGAGGTGGAAGGGGTTTCAGCAGTGGATGGGGAGGGGGAGACAGATTTGATGACAGAGGACCTCGAGATCGCTTTGATAGTCATAGGGGAGGTGATCGCTATGGTGACAGAGACTATGATAGGGATCGAGGTTATggtggtcgctatggagatagagacagacgtggggattatggtcctcgtggtGGAAGAGACCGCGACAGAGGTGGTTATGGTGACAGAGGagacagaggtgGAGGATTTGATAGTGCAGAGTCGTGGAGGAGTGGTAACAGTGATGTTAAGGATGAACCCTCAAGAAATTCACAAGCACAAGATTTTGAAAGAATGGAAAGAGAACCTGTTAAAGAGCGACCCAAGCTGCAGTTGAAACCTCGCAGTAAAGCAGCAACTGAAGAACAAAATCAAGCCTCTAGCTCAGCTATATTTGGCAGTGCCAAGCCCGTTGATACAGCTGCTAAGGAGAAGGAAGTGGAGGAGCGAATTGCTCGTGAAAAAGCTGAAGCTGAGAGAAAACTGCTGCAGGAGCGAGAAGAGAGGGAAAGGTTAAGAGAGTCACGAGGCAGTCGTAGTCGACGCGATAGTAACAGATCGAATGATGGTGATCGTGCACCAACAAGGGAGCGTCTTGAGAGCTCAGGAAGTAGCGGGGGGCGCAGAGAAAGATCCGGAAGCACAAAATCGTCGGGAGAAGAGAAGCATGCAGATAAGGGGAAAGAACCCACATCTCCTGGTTCTTTAAAATTAAGCAGCAAGGAACCACCCAAGGAGGCCCCGCCACCCACAGAAAATATCTGGACAAAGCGAATGGAGGCACAGAAAGCCGCAGCAGCAAAACAGGACAATGAAGAAACAGAGGATCAAAAAACCGAAATTTCTAGTTCAGTTGTTGCAGAAAAAGAAAAAAGTGACTTTGGCCCTCCACCTTCACCTGTGAGAAGTGGTTTTGGAAAATCTGCACCGATGAAAAAGGAGGGACGAGAAAATGTGTCGAAGGGAAGAGGGCGTGGCCGAGGAGAGCGGCTTCCGCCATCCGATGGTACCGGGagggaaagatcacaagataagagagagcaagacaaaaataaaaagagagagagaaaaCCTCGTGAAGCAAAATTGTATGAAGAAGCTGCACAACCTGTGTTTCACAAGGAGAGCAAATTTTCAGCGCTGCTTGATGACGAGGAACAAGAAAACAGCGATgaagaacaagcAAAGGCGGCCAGTTCAGAGGATCTACAGGACAACTGA

Transcript

c0711.g005.t1

Protein

Uniprot

Uniprot term	Description
P23588	Eukaryotic translation initiation factor 4B OS=Homo sapiens OX=9606 GN=EIF4B PE=1 SV=2
Q8BGD9	Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE=1 SV=1
Q1JPH6	Eukaryotic translation initiation factor 4H OS=Bos taurus OX=9913 GN=EIF4H PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR033107	Domain	Eukaryotic translation initiation factor 4B, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03258	EIF4B; translation initiation factor 4B	-	Translation factors	ko03012	deepkoala