Gene detail

Detailed information of c0727.g001.t1 in Palythoa umbrosa

Genomic Location: c0727:2215...9877
NR annotation: CAH3137704.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0727.g001.t1

ATGATCAGTGAGGAAGAAAAACGCTGGTTATATGTTGGTTTGGCACTCAACAAAACCCTTGTGCCAGAATTACTACCATTGCTGGGGAGAGAGGTTGGAGCTGAGTACCAGAAGCTCAAAGGACCACCTCATCACATTGACACCCAGGTCCCAGCAGGTCGTCTTACCAAGTGGCCAGTAACAGCAACGCCATTTTTAAAATATGTGAATATTAATGGCAATGATGTACACAAGTTGCCTAGTGGAAAGTATGATTATTCAAAGTTCACTTACCAAGTCAGTTCTGATGTGGACTTTGCCAAGTTATTCTTACAACCCCACATGGCAAAGTTCTCAAAATTTTCCGAGTGTGATGCATCAGCTGTACTGAACCTTTTGTGCTCAGTCCCAGTCTTCTCACCAGCAACACAGACAGCAGCAGCCGCTGTGAAGGATAATGTACGGAATGAGTGGGCTCACTGTAGATTCAAGGAATGGGATGCTGTTAAATTTGCAGACTGCTTTAAAGAAATGGAGCAGCTGATATTGTCTTTCAAGTTTGCAGCTGCTCAAGAAGTGTTGCTACTGGGAAAAGTAAATGAGTGGAAGACAAAAGGTGGCGCAATGATTGCTGAAAGTCTGGTTGACTCATCCCTGATAACTATGGCTATgcaagagattgcattactgaagaaagagatcaCATCACTGGATACAGAAAACAAAAAAAGGATTGATGCTTTGGAGGATCTTTCTAAGAAGTTTTCAGATCTTGAAAAAACTGTCAAGCAACATGagAATGAGAGATCAAATATTACTAACAACAAAATAGAGAACAAGCTACTAGACTCTCCTGATATTCCTCATATGAAAGTTGATGACATCTACACAAACATGGTTATCCAGATAGGTCGTAAAAAGGAGAATTTTCGTGGAAAAAAGAGAAGTGAAATTCTCTCTGCTTATCCTGAACATAGCAACGTTTGCATTGAGAGAGCAGAAGAACTGTTTGTGCCAATGGGAGACACCGAAGATCCCAAACATATTCTCATCAGAGGTCGTGCGGGTATAGGGAAAACCCTCTTTTGTCAAATGTTAGCTCGAGACTGGGCAAAAGAGCGTTTGTTCAGAgaagaaaaaaataaaactaaatttcagtttgttttCCTTTTCACCTTTCGCCAATTAAACTCGATTGAGGAGGATCTAACACCATATGACTTTCTCAGATCTTCTCAGACATGTCCCGAAATGACAAATGATATATATGACTTTATCATTGGCAATCCTGAAAACATTTTGCTAATCTTTGATGGTTTTGATGAGTTCAAGTATCAACAGGAAGTACGGCACCAAAGAAATATTGTTGGAGAGAAGATGAATGTTGGGACACTGGTTGCAAAGATAGCAGCAGGTGAATTGCTAGCGAACGCAACTGTTGTCATTACAAGTCGTCCCGAAGCAGAGGGTAATCTTTCCAAGCTGAAGATTCAAAGAGATGTTGAAATTTTAGGTTTCAACAAAGATCATGTGAGAACATATGTTGATAAGTTCTTGAACAGAATAAACAGCGATCGTAGACAATTAGCATTAGACTACATTCTGACAAATGAAAACATTTTAACGTTTTGCTATGTTCCCGTAACCTGCCTTCTCGTTTGTTTGTACGTGGAATGGCATGTGAATGAGAACTCAGGGCCAGTCAGTGCTCCTTTTCCAACCACGATAGCTGAACTCTATCTAGAGGTTGTACGAATGTTTCTACTAAAACATCATAAAGAGTGTAGAGGACAAGAAAACCCGCACCTTTCTGACAGTGCACAAAATGCATTGGACAAATTATGTCATTTGTCTCTCGACTTTCTCAAAAGTCAAACTTTCATGTTCAGTGACGAGGATCTCAACACATATGGCGTACGAAAAGAAGAAATACATGCATTGCTAAGCAGTGGGTTGATTCATTGCATACCAGGGTGTAGAACTGGACCCTTCAGCACCAAGACGTACTACTGTTTTCTCCATTTAACACTGCAAGAATTTTTGGCAGCCTGTTGTTTGATTAAAAGTGGAGAATTAATCCGAATGGAGCGAAACGCTACGGAAGATTTTCAAGGCTTATCAGAAATGGTGTTTGAATTCGTTGCTGGTCTTCTTGGAACATTAGTTAGGGAATGCAGGGAAAATATGTTTGGTTTATACATAACAGAAgagaacgctgataaaaTCATGAGTTCTTTAACTGAGAAAGCTGATAAAAAGCTGTTAGTAAGACTACTGTACGGTTACAGGAAAAAACAGTTTGTTCAGAATATCCTACGGGACCGTGATCTCAGTGTTCTGATTCTGACTGATGTTGATAGTATCACATGTCAGGCCGTAGCTTTTCTTCTGATGACGCAGGTGGATCTTGAGCATCAAGTTAAACGTTTGAACCTTGTTTCTGTGTCTGAAAACACAGACTTAAGATATATTGGAGAAGCACTGAAAAGTGAAAGTTGCCAAGAGTTGGATCTTTTTCGAAACAAAATAACTGACAAGGGAAAAAAGCATCTTAAACATGCTCATAACAGTCCCAACTGTGAACTTAAATTATGA

Transcript

c0727.g001.t1

Protein

Uniprot

Uniprot term	Description
Q5DU56	Protein NLRC3 OS=Mus musculus OX=10090 GN=Nlrc3 PE=1 SV=2
P79621	MHC class II transactivator OS=Mus musculus OX=10090 GN=Ciita PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17779	NOD2_WH	NOD2 winged helix domain	Domain	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050637	Family	NLRP family, innate immunity and inflammation regulators	Interproscan
IPR041075	Domain	NOD2, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan