Gene detail

Detailed information of c0749.g009.t1 in Palythoa umbrosa

Genomic Location: c0749:124165...135478
NR annotation: XP_020611826.1, uncharacterized protein LOC110050261 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0749.g009.t1

ATGTTGAGGAGCGTGTTGACATTGGCCTGTGTCGTGTCGGGAGGTATTTGGGCTCACATAGGTCAATCCTCAAATCGAAAAGGGCCTTTGGTTTGGAGTATCGTGCCCAGTTCTTCCTACCTTGTGTCTGAAACCCGGCCAGCTAATTTGGTCTGTGCTGCAAAGAACGCGCGTGATCTGGTGCTGATATGTAATCGCAAATGGCTGATACCGAAAACACTCAGACAGGGTGGAACAAGGCGGACTATAAGAAGAGTTTGGCTAATTCGTGGTTCTGATCTAAAACATCTGAATTCGAAGAAGAAAGAATTTAGATGTAAATGCAAAGCCTGGGGACAAGGCCAGAAAGTAATTAATACCAACACCACCGTAATTAGGCTCTCTTATATACGGAAAACGTTTGGCGAGGTTAATACTAGCCGGATTAAGAATATCAACGATTCAGACATTCTGAAATGTAGGCCGCCAAGAGGATTCCCCAAGCCGAGTGTGCTCTGGATGAAGGACGGTGTTCCGCTTGGCAAAACAGAGCTAGAGGCTTTTCGCATGCGGTTGACTAAGAAAAAGAGCAATTTATTTATCAGGAAACTAAAAGCTAATCACACGGGAAAATATCAGTGCGTTGTGAGAAACTTTGCAGGCACCCGCAGCggaccagtaatttccctaactgttcaagAGCCATCAGCCAACTATGAGCACAACTTCATAAACTCTGAGTGCAAGAGCAACAACAGAAGTTTTGTCAATAATTGCACAGTTCCTTCACAGTTTGCTGCCCTTCTCTTTGTGGCCACTGAAAAGGGTATTAAACAGCTTTCCTTGAACACTTCTCAGAAGCTTTTTGCATATAAGGAGCTTAAAGTTTACGACAGAAGCGCTTTGAATGTAGCGGTATCTTTGCACAACAAATTAATCTATTGGACTGATGGACAGTCGATACAAAGGAAAATCTTATTTCAACCCAAAGCTTCATTTGTGACCAGTTCACATTCCTCGGAGCCGGAAGGAGTTGCAGTCGACTGGGTTAGTAAAAAACTGTATTGGACTGACAACAATCTAAACAGAATCGTTGCCACCAATCAACAGAACGATGAACGTTCAGTGGTGGTTATAGATGGCCTAAGTAACCCCAAAGCGATAGCACTGAACCCACTACACAGGTTCATGTACTGGACGGAGTGGGGAGGGGAGAGTACAAGAATTGCGAGAGCTGGAATGGATGGCAGTGGCGCTGAGTCAGTGATAACGGCGAATTTAGGACACCCAAGTGGACTGGCTATAGATTATGCCACACAGCGACTATACTGGACAGACAGTCGGTATGGGACAGTGCAGAGCAGTTGGTTAAATGGATCAGATCGCTTCACTATTGTTAATGGAAGTGGGAGGTTTGAACCATACGGAATTGCTGTTTGGGGTGGTTATGTATTTTGGAGCGACCGCAGGACAAACGCCGTGTACAGTGTATCTAAACATGGCGAACTGAGTGTTTTCATTCGTGGACTCGAAAGACCTTCGGGACTTACAGTTCTATATTCCGGCTGCCAGCCAACAGATGCCAGTTCTTGTGAAAAAACTCAGAGTGGATGCAGCTATTTGTGTTTGCTTTCGCCGGAAAAGAAAAAGTTCAAATGCGTCTGCCAAACGGACATGATTTTAGCTACGGATGGGAAGACGTGCAGGATTAAAGACAGGCAAGATTCGTCAAAACCTGCTTTGATACACGCTGGTTCCGCCAATACTGTTCTTATTTACATCCTTATTGGCATCATAGCGGTGCTAACAATTGTACTTATAAGCACACAGTTTAAAAACAACCGAGAGATGCGTAAGTTGCGTTCATTGTTAAGGATTCGTCAAAAGTATAATAACCCTGACAACAATGAGATCAGTACCGCAGCCGAGCCAACCGACACTACCACGGTCGCTGCAGAAAACTACCACACAGAGAGCTACCATGGCAACAGCACTGCATCTAATTGCCATGGTAACCAAGCTGCAGcgttgttcaaattACTTGTCGCCTTCTTATTTCAGAAGTTGACGTTGATTACTATCAAGCAATTTTCAAAATATGCCACTCATCTAAAGCAATACGGCGGAGTTGCATCCATTGGAGATGGTACCAAGATAAACTGCACTGGTGCTGAACAGGACAAAGCTGAAGATTCTGACCAACAAGTCAGTGAAGACAGCCAAGAGTGGGCAGAAGAAGCTGTATAA

Transcript

c0749.g009.t1

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
Q91ZX7	Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus OX=10090 GN=Lrp1 PE=1 SV=1
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan