Gene detail

Detailed information of c1025.g010.t1 in Palythoa umbrosa

Genomic Location: c1025:87709...102728
NR annotation: KXJ13281.1, Deleted in malignant brain tumors 1 protein [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q2VLH6	Scavenger receptor cysteine-rich type 1 protein M130 OS=Mus musculus OX=10090 GN=Cd163 PE=1 SV=2
P30205	Antigen WC1.1 OS=Bos taurus OX=9913 PE=2 SV=1
P30204	Macrophage scavenger receptor types I and II OS=Mus musculus OX=10090 GN=Msr1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00431	CUB	CUB domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan