Gene detail

Detailed information of c1051.g002.t1 in Palythoa umbrosa

Genomic Location: c1051:7021...29680
NR annotation: KAJ7375252.1, letm1 and EF-hand domain-containing protein 1, mitochondrial [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1051.g002.t1

ATGATATACTTTAAAACAGGACCCCTTTTACGTACTGATCTCTTCAGACACATTGTTAGAGCAAGCGGTGGATTGCAATCAAGATACAGGCGTTACCCATGTTTTCAGTGGCTTGCAGAACAGAAAAAAAGATTAGGTCACCAGACTGCTTCTTCCTGCCAAGACAACAGATCAGAAACACCTGTTTTTGTGAAAGATTTTAACATTCACATACCTTGTGTCAACTTTCATTCTGACCAAGGTTCACCTCAACCTCCTTCTTGTTTCAAGCGCAGGCCAATCCATTGCTATCCTGTGGATCATCACTTGAGTGTATACAGATATCAACGTAACAGGTCAATAGTTACAAGTTGCATTAGATGTGAGCCTAAATCTAACAAGTCGTCAAAACCAAAAATAGATGAAGAAAAGTCAAAGGTTGAAGAAGCAGTTGAAGCCATCAGGGAAAAGAAGGAGATATTAAAAGAAAAAGCTTTTCAGTCGTACTGTGCTCCAGAGGATCTAGAGCCGAAAGCACCGGCTTTGGCTCCTAAAAAGCCAATATTGATTAGAATAAAAGATGAGGTATTACATTATTACAATGGATTCAAACTGCTCTACTATGATTGCAAGATTGCTGTAAGGATGCTATGGCAAGTGATGAATGGGAAGTCATTAACTCGGAGAGAAAGAAGACAGTTCCTCCGAACAGCTTCTGACTTGTTTCGGTTACTTCCATTCCTTGTGTTCATCATCATTCCATTCATGGAATTCCTGCTACCAGTGGCTATCAGATTGTTCCCAAACATGCTACCAAGTACTTTTGAAGATAAATCAAAAAAGGAAGAGACTAAAAAGAAACAATTGAAACTAAAGATCCAAATGGCAAAGTTCTTGCAAGACACAGTTGAGGAAATGGCTGTAGCAGCAAAGAAGAAAAAGACTCAAGAAGCTGTAGTCGAATTTGCAACTTTTTTCGAAAAGATCAGAGCCAAAGGAGAACAGCCAAGCAACGAAGACATTTTGCGATTTTCCAAGCTTTTTGAGGATGAGATCACACTGGACAATATGAACCGTGCCCAGTTGAAGGCCATCAACAGGCTCCTCACCCTACCCACCTATGGGACCAACAATTACTTACGCTTTCAGCTTAAGATGAGATTAAGGCAGCTGAGGACAGATGATCTGATGATCAAGAAAGAAGGCGTTGATACTCTGACAGTACAAGAGGTTCAGTCAGCCTGCCAGGCCAGAGGAATGAGAGCCATAGGGGTGCCAGAAGCTAGACTCAGATCCCAACTGAAGCAGTGGATCGAACTTCATCTCCAAGAACAAATTCCTGCTTCACTTCTCTTAATGTCACGTGCAATGTACCTGCCCGAGACGGTGGGCAAGGTGGATCAGTTAAAGGAGGTCTTGTCTGCTTTGCCGGAGCAAATTGTTGAAGAAACAGAAATCAAAGTTGCTGAAGCCGCAGGAGAAGTGGTTGACAATAAAACTCGACTTGATGTGCTGAAGAATGAAGAAATGCGCATTGCGGAGGAGAATGAGGAACGCATCATGCAGAAGATTgaagaagtagcagcagttgctgcGGCTGGAGAGACTTTGGTGGACAAAGCAGAAGCCATTTCATCAGTTGCTCAAAAGGAGGACATCAGCAAAGACGATCTTCTCTCTATCAAAGAAACTTTATGCAGTGACAGAGAACGGGAAGAGCTGGAAAGAATCAAAGAGGATCGTGAAGAATACCAGGAGGACGTTCGTGAACTCGCAATGGAGGACAAAGATAAAATTCTAACGGAATCTGTAGGATCAGTTCGTCTAGGGAAAAAAGTCGACAAGATGATAAAGCAAATTGAAAAGAGGCTGGAGGCAGACCCACTGGAGGCGCAGGATAGACTTAAAATTGATGCCGATGGTGATGGAAAGATTTCCATTGAAGAAATGATTGATGCTGTTTTGAGAATGAATAACGCTCCCAGCGAGTCTAAGTGTAGAAGGATTGCAGAAATGCTCGACCAAGACAAGGATGGAGCTGTGGATCTGAATGACATTGATAAAGTGGCCGAATTATTGGCTTCAGAAGATGTTGATCTTGCACCGAGCCAGATTACTGAAATTGTCGAGCTTGTAAAGATGGAAAAGGAGTTTCTAgaaacagaaACGGAAGTGGagcagaaagaagCAGAAATAACGCGAAAGTTAGAACAATGGGATCTTGATTCGGGTGAAAAGAGAAAGTCTGATGGACAAATCTGA

Transcript

c1051.g002.t1

Protein

Uniprot

Uniprot term	Description
Q5ZK33	Mitochondrial proton/calcium exchanger protein OS=Gallus gallus OX=9031 GN=LETM1 PE=2 SV=1
Q0VCA3	Mitochondrial proton/calcium exchanger protein OS=Bos taurus OX=9913 GN=LETM1 PE=2 SV=1
O95202	Mitochondrial proton/calcium exchanger protein OS=Homo sapiens OX=9606 GN=LETM1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07766	LETM1_RBD	LETM1-like, RBD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR033122	Domain	LETM1-like, ribosome-binding domain	Interproscan
IPR044202	Family	LETM1/MDM38-like	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14009	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006875	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17800	LETM1, MDM38; LETM1 and EF-hand domain-containing protein 1, mitochondrial	-	Transporters	ko02000	deepkoala