Gene detail

Detailed information of c1099.g006.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: RMX38707.1, hypothetical protein pdam_00005882, partial [Pocillopora damicornis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q80ZF0	Collagen alpha-1(XXVII) chain OS=Rattus norvegicus OX=10116 GN=Col27a1 PE=2 SV=1
Q5QNQ9	Collagen alpha-1(XXVII) chain OS=Mus musculus OX=10090 GN=Col27a1 PE=2 SV=1
Q8IZC6	Collagen alpha-1(XXVII) chain OS=Homo sapiens OX=9606 GN=COL27A1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala