Gene detail

Detailed information of c1128.g002.t1 in Palythoa umbrosa

Genomic Location: c1128:18631...46091
NR annotation: XP_048581437.1, receptor-type tyrosine-protein phosphatase alpha isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1128.g002.t1

ATGTTCGACCTAGATTATAGCATTCTATGTTCAAATGGCTACGGCAAGATTTTCAGCGGACACAACGTCTTTGGCAGTTCTGCCTCTGAATCGTCTTCAGGCAGATGGTTTGGTCTGAAACTTGTGGTTATTCTGTGGATCCTTACAGAAGTGTGTACCCTTTCACAAGCAATAAACGTCACCATTGTCACAGTAACAGAAAAGAAAACTGCATTTTTGAACTGCAGTCAGTCATCAGGACTTGTGCAATGGACCTTAAATGCTACAGCAACCCAAACATTAATATTCCCATATAATTCCACGGTGCTAAAATTTAACACAGTGACGCGAAATGATTCAGGGGTTTATGTTTGCAATGGAACCAACTCAAGTATTTATTATTTTCAGCTCATTGTCAATTATGCTGCTGAAGTGATTAGGTTTTCAAGTACTCCATCAGAAACTCTTAAACTGTCAGTTGGAAGCAAAGTGACCCTGAAGTGTGAAGCGCAAGGCGTGCCTGGTAACATCAGCATGCTGTGGTACAAAGATTACAAACTAAAACAAACCAGGACAGGTAAATCCACTGATTCATACACAATAGAAGATGCCAAATGTGAAGATGGTGGAAGATATGAGTGCTCTCCTCGCAATTCAGTTGGAAATGCAAAGAATGGAACATTTGATGTTTCATTTGTTGGGTTGCCAAATGTTCCAGACTTGGAGATTGACACAAGCAGAACAACTGCAACAAGTCTTACACTGACATGGAGTCGAAATCAACCTACATGTGTACATATAAAAAACTTTGATCTAAAATATTGCGAGTTTAATTATTCGACAAAAACATGTGTTACGTCTGAAAAAATACTACCCAATGCATCGACAATAAATTCACACACACTCACGGACCTGAAGCCATATACTATGTATGCTGTGTGGGTAAAAGCAACGACCCATTCGGGAAACAAGAGTAACTGGAGTGGAAATGCTTTGAAGCGAACAAGTAGAGCAGCACCGTCACGCCCAAGGAATCTCACTGTTCCAAAAAAATCAGTTCCTGTTATAATCTCGTGGAGTCAGCCAGAACACCCCAATGGACCTCTGAATGAACTAAAATATCTGGTTTTATATAAATCAGCTGATGGCATAAACTGGGACAACGAATCAACAAATACCAGCAGTCATACACTGAATCTTGTTGCTTTGGAAGAATACATGGTGAAAATTAAAGCTTTTAATCAAGCAGGACTTAGCAATGAGAGTGACACAGTTAGTTTTGAGACGTTGACTGTAAAAGAGGGAGAGAATGGATCCAACAGTGGGAAGGTGGCAGGAATAGTAATCGGAGTAATTGCTGCTGTAATCTTTATTGTGGTTGTTGCCTATTTTGTAAGGAGGAAAGTAAATTGTAAACTGCCGTTGCGTGGTTTCTTCAGCCTGAGTGAGTCTCCAAGCCTCTCTCCATTACAAAGAATCCAAAGTATAAGATACGAAGAGAGACGCGACCCAATCAGAGTAGAGGGATTTCCAAGTCACGTGGTTTGGCTCCACGCAGATTCTGATTACAGGTTTTCACTTGAGTTTGAGGCGATCAATGGTGTACATGAGAAAAGCAAGAAAATAACTTGGGACCACTCTAATAATTCTGAAAACCAGTCCAAGAATCGCTTCGTAAACGTTGTTGCTTATGATCATTCTCGTGTTGTTTTGTCGCTGAATGAAGGTGATCCTAATTCGCACTACATCAATGCAAACTATATTGATGGGTACAAAACAATGAATGCCTATATTGCAGCTCAAGGTCCCCTTGCTAAGACAAGAGCTGATTTCTGGAGAATGATATGGGAACAAAACTGCCGCGTTGTGGTGATGATAACAAACATTATAGAGAAGGGAAAGCATAAGTGTGCAATGTACTGGCCATCCAAGAAAACAAAGACAGAAGCTCATGGCCCCTTGCAAGTTACTTTCCTTGACGAGGAGAGTTTTGCAAACTACACAGTCCGTACTCTAGAAGTGAAACCTCTGGAAGGACAAAGCCACTACAGCCAGTTTAAGTACCCTCCAGGAATCGCTACTGGGACAGGCTGGGATCCTTCAGATGAAGAGATGAAACCCATGATTGTGAAACAGTTCCACTTCACTTCATGGCCTGATCATGGCGCACCAGATTATTGTTTTCCAGTGTTGGACTTTATTGTTAAGTCAACAGCGGCAAACCGAAATAATTCAGGGCCTGTTGTTGTTCATTGTAGTGCTGGTGTTGGACGGAGTGGTGCATATATTCTCATAGATAGCATGATGAGAAGAATACAGGACACCACAGACCTGGATGTTTTTGGCTTCTTGGTTCACATAAGACACCAGAGAAACCATTTGGTGCAAGAAGAGTGTCAGTACATCTTTGTGCACGACGCTTTGGCGGAGTACATAAAATGCGAGTTCAATCTGTCAGTCAAGAAAGCAGATCTAAAGCAACACGTTAAAGATCTACGTATCCAGAGGCCAGATACAAACAGGACCGGAATGGAAAAAGAATTCCAGAGGTTACGAAGTATAAAAGTTGAACATTACAAATGCAAGGAAGCAGGGAGGGCATGTAACGTTTCAAAGAATAGAGATAAAAACTGTATTCCAGTTGATTCGACCAGAGTAAAACTGTACCCTCGTCCTGGAGAAGAAGGCTCCGATTATATCAGTGCCAGTTATGTAGATAGTTTTTGGAGGCGAGAAGCGTACATAGCGACACAACACCCCCTACAGTCAACGACTGACGACTTCTGGCGAATGATATGGCAGGAGAACTCGCGCAGTATTGTGATGCTGTTATCACAAACCGAGTGGGAGCAGGGTAACTTTCACCGATATCTTCCTCCCATCTACGACTCCAAGCGGTTTGGCTCTTACGAGGTCACCGTTGAAGCTGAGAACACTCGAGGAGATGTCATCACAAGAGAAATAAAGATGATAAAAATAGAGGATCCAAGCGAGTTTCGGCAGATTCGTCACTTCCATTACTTGCACTGGGAAAAGGACGAGTTGCCCTGGTCTGGACAGACAGTCCTTCAGTTGATCAACAAGACAGAGGAGTGGCAAACAGAGGTCAAGGAAAAAGCCAAGAAGTTTGAAATGATAGGACCAGTGGTGGTACACTGCAGCACCGGGACGGGTCGCACGGGAGTATACTGCGCATTACATACGTTATGGCAACAGCTGCAAAGAGAGAATGCGGTGTCTGTCTATCAGACAGTACACATAGCCATGCAACAACGTCCACACTGTATCGAGACACAGAAAGAATACGAGTTTATATATGACACGTTATTGGAATTTATCGAAGCTGACTGTTCACTGTATCTGGTATGA

Transcript

c1128.g002.t1

Protein

Uniprot

Uniprot term	Description
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan