Gene detail

Detailed information of c1172.g010.t2 in Palythoa umbrosa

Genomic Location: c1172:68889...81969
NR annotation: CAH3040726.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1172.g010.t2

ATGAGAAAAGGGGGAAGCCGTAAACCCAACCGTTGTGGCGGAAAATTCAATAAACCAAGAACCTTTCCTCCAAGCAAATCCAGTGAAAGAAAGGAAAACACAAAAGGAAGAAAATTTGAAGATGACGAATTTCTACAACCTCGTGTGGAATCCGTTCAGGATTACGGCCCAGATAACAGCCAAGTAGAACATCATAGTAAACAGAAATTTGGGTTAAGGCCACCGAAGAATCAGGCTCGTATTCAACGACTACAAATGAGCAATGAAAATCAGGAAATGGTGCTAAAAGTTCTTAAACAACTTGAGGCAGAAGGGCTTCGAGAGAAGGAAAACAGAAAAGAGGATTTTTCGGAGGGCAGATCTTATAATCCTCGAGAGGCTGTCAAGAATGAACGGTATTGGAAAAGGATGGAAGACCAGAGGCTAGTTGTTGAAGAGGCAGTAGGTTCAAAGAAAGAGGAGGAAATTGCTAACAGGTTTGCGATGAGCAAACTCTTAAAATGTGGCTTTGAAGAAAACAGATGTGTATCAGCCCTTAAAAACTGCAGTGATGATGTAGGAGCTGCCCTGGAGCAATTAATTGTTCAAAGCTGTGGTGTAAAAAAGCTTGCAAAAGAAAGTGAGGCTTCATCAGAAGACTTACTTAATGAGGCTAAGGTTCAAAGAAATGAAGAAGCTTTAGCTCTAGAGTCGATATATGGTGAAAACTTTAATGAAACAATATCAAATCGCATCTGGGTAATAAAATTAACTCTGGAATATATAACAGAATATTTTAAACAAGAAAAGAGGAGGAATGAAAGCTATTCACCAGTATCTAGACCTGAGAAAATCCCCAGAAATCTCTGTAAATTCTTTTTGAAAGGGTGCTGTAAGTTTGGAAGCAAATGTAGAATGAGCCATCAATTACAAGAAAGGCCAACATCAGATTGCTTAAATCAGGAAAACATTGATGGCAGCAATTTAACAAATGAGTCAACATTTCATTTAGAAATCCGATTCCCTGAAGGATCTCTATATCCCTATGAAATTCCTATCATTGCATTTTATTCAGTCCTTGATACTATTCCCAGCCATGCCTCTCTGAATATAATGTTAAGGTTAAGTGAAGAAGCTAAGACACTTGCAAAAGATGGGGTTCCTGCTGTGTTTACACTTGTCAGTTTCCTTGAAGATAAGGAACAAGTGCTCAAGCATTTATCTTCTCCACCATCTGAGTTTAGCTTGCGAGAAATAAAGAAAAAAATGCTTGATGTACAAAGAGAAGAAAATGAGGGAGCTGCTACAGAATTGGGGGATGAAGCAGGAATTTCCAAAACAaaaaATGGAAAAGTACCAGATCCACTTAAGAGAGAAGAAAAAGAACATTTAAACCAGAAGCTGAAACAACAGTTTCAAAAACTACAGTCAGTCCCATCTTACAAGAATATGCTTGAAGAACGGAAAAAACTGCCAGCCTGGAAGTCACAGAATGAAATACTTGATGCCTTGGAAGAGCACCAGGTGGTTGTAATCAGTGGAATGACTGGATGTGGTAAAACGACACAAATTCCACAATTCATATTGGATTCTTTCTTGAAATCTGAAAAGGGAACTGACTGTTTCATTGTTTGTACACAACCACGTCGAATTTCTGCTACATCAGTCGCTGAAAGGGTTGCTAGTGAACGAGCTGAGAAAATTGGTAACAGTGTTGGGTATCAAATCCGACTGGAAAGTAAGCAGTCATCGTCAACCCGGCTGTTGTTTTGTACAACCGGAATTTTGTTGAGACGTCTTGAGGGAGAAGCCATGTTACCTGGTGTGAGTCACGTCATTGTAGATGAAGTCCATGAACGAACAGAAGAGAGTGATTTTCTGATGATGGTTTTGAGAGGACTGATTGCTGAGCGACCAGATCTCCGTATTGTTCTTATGAGTGCCACTCTGAATGCCGATTTGTTCTCTAACTACTTTTTCAATGCGCCAGTCGTACACATTCCAGGGCGAACGTTTCCAGTTGATCAGTTTTTTATCGAAGATGTGCTAGAAATGACTGGTTACAAAGTTGATCCTGACTTGCAATTTGCCAGGCCTCTGAAACGTGCAAACGCTATCCCCACGGGGTTAGGGTCGGGGGACACGATGAAGAGCCAGCAGTTGATAAAGGAGTTCAAAGAAGCTGCCATAACGTCAAAGGAAGCTAATAGGCCGCCTAATAATAAGATCAAAGATCAGAATCTGAGTGAAGAACTGATGGCCTTGAGATATGCAGAATACAGTGAACGTACGGTCACCTCCCTCTGCATGATGGATCACGAAAAGACAAACTACGACCTTATCGTATCATTACTTCAATGGATAGTTGATGGCCATCACAAGTATCCCACGTGTGTCGCTGTGCTGGTTTTCCTACCAGGAATGGGGGAAATTATGACGCTGTACGAGCAATTGCAGAATCACGCGACATTCAGCCCCCAAAAAAGTAaaaGGTTTCGAATCATTCCACTTCATTCGTCACTTTCAAGTGAAGAGCAGAGCATTGTGTTCAAAAAGCCTCCGGATGGGGTTACGAAGATTGTCCTATCAACAAACATTGCTGAAACCTCGGTTACAATTGATGACATCGTTTATGTCATCGACAGCGGCAAGATGAAAGAAAACAGGTATGACTCGAGCAAAGGCATGGAGAGTCTGGAGGAGACCTGGGTGTCACGTGCCAATGCACGTCAACGGAAAGGAAGAGCTGGCAGAGTTACATCCGGGGTCTGTTTTCATTTGTTCACGAGGAATAGGTTTGAATATCACATGACGGAGCACCAGTTACCAGAGATCAAGCGCGTGCCTTTGGAAAAACTCTGCCTAAGAATAAAAATTCTTGGCATATTTTTCGGACGAGACGTGAAGGACGTTTTGAGCAATCTTCTGGAACCACCTGAGGGAAATGCTATCGCTGATTCCATCGCGCGGCTACATAGCTTGGGTGCCTTAGATAGTTTCGAGAATTTAACTTCATTAGGATTTCACTTGGCAGCCCTACCAGTGGATGTAAGGATTGGAAAATTGATGCTTTTTGGAGCCATTTTCAGGTGCCTGGATCCCGTTTTAACCATTGCAGCAAGTCTCAGCTACAGATCTCCATTTTCGGCCCCCTTCGACAAGAGAGACGAAGCGGACAAAAAAAGATCAGAGATGGCAGTTGGTAACAGCGACCATTTAACTCTGTTGGCGGCATACAAGCGCTGGACTGAGACTGCTTCTTCAAGTTTGAGTGCTGGCTACCAGTACTGCCATGAGCATTACTTGTCAGTGAAAACCCTACAAGTAAGTTGTGATGATTATTgtgaaagatttataccgcggttgtatgcaatgacgttttga

Transcript

c1172.g010.t2

Protein

Uniprot

Uniprot term	Description
Q6P158	Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens OX=9606 GN=DHX57 PE=1 SV=2
Q6P5D3	Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2
Q8VHK9	ATP-dependent DNA/RNA helicase DHX36 OS=Mus musculus OX=10090 GN=Dhx36 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala