Gene detail

Detailed information of c1195.g003.t1 in Palythoa umbrosa

Genomic Location: c1195:8441...29926
NR annotation: XP_022788107.1, serrate RNA effector molecule homolog isoform X2 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1195.g003.t1

ATGGGAGACAGTGATGAAGAATACGATAGAAGAAGAGGCAGAGACAAATTTCGTCGGGAAAGAAGCGATTATACGGAAAGAAGACGGGAGAGAGACGATCGCTCATCGCGTCGTGACGACTGGTCTGACCGAAGAAGGGGCGAAACTTCTTGGGatcgaaggagaggcgaaTATAGAGACATGGAACGCGGTAGACGAGAAAATTCGGGAAGACATCATGAAATGAGCCCTCCCATGAAGCGAGTTAGAAGGGATTGGGATGAACCATATCATGGGGACCAGTCTTTTGTGCCTTATGGTGGAGGTGGGGTGGCACATCATGGAGGGGCCTGGGGACACCCAAATATGGACATGCAACAGATGCAACCTCCACAGGATGCTCGGCAACAGAGGTCTATCCTCAACAGGGGGGACATGGATAGTCAGGCAAATGTACCCGCGATGATGACATTTAAACAGTTCTTAAATGCCCAAGAAGACAATATAGATGACATGGAGGCTGTCCGCAAGTATCAGGAGTATAAACTGGAGTTTAAGAAAACTCAGATGGCTGATTTTTTTATGAACCacaaagaagaagaatgGTTCAAAAATAAGTACCATCCTCGTGATGCAGCTGTCCGTCAAAAAGAAGCTCTTAAGTCTGTAAAGAAACGGTTGGCAGTTTTTCTTGACTTAATGGGCACAGGTCGAATGGAAAACCTGACACTAGATGTGGAGAACACAGATGCTATCATAAAAGTCTTGGATGCAGTTGTGATCAAACTGGAGGGAGGGCATGACAGTGACCTAGCTATCCTAGACAGACCTGCCACCCCGACACCTGAGCAACGCCGAGCATCATCAAATCCTATAGCATCCCCTCTCGATGAGGAGAGAGATGGTTTGAGGGGGCAATCACGAGAGCGTGAGGCGGGTACCCCCAAGAGTTCTGAAAGTCAAAAAGATCACAGAAGAGAAGGATCAGCAAGCCCAAGAGGGAAGGGCAAAGTTTCCATACCAGAAGCAGGGCCAGTGTCTCCATCATCAGTGCCTCTCCCCGACACTCCTGCTCCTCCATCCAAGAAATCAGAATCTTCTAAGAAGAAAAAAGACTCAAGTGAAGTGAAACCTATTGCAATGCTGGAGCcaacagcagaacagaaacagttacagcaacaagcgcagtactatcaccagcagcagatctactatcagcagcaacagGACTACTATGCAAGACTACAAGAACATCAACAAAAATATGGTACGACAGAACCTTTCCCATACCCCCCTCCACAACCAGTTGTGCCACCGGCCACGGGTTCAGAAAAGAAGGAAGATGGTAAGAAGAAGCGAAAGCGTCGCCACAGAGAACCTTATTACTATGATGAGATGGATGATAGtgaaagtgaatccgactcagattcagaacctgaaccagCCCCTCCAGGAGAGGAGGCATCCCCAATGGAGACTGGGGCAGAGGAAGAACTAATGCCACCAGGAGTCGAGGCTCCTTCCCATGACGACAGCTTGCGACCACCAGGGGTGGAAGAGTCAAGTGTTGCGGAGCCGAGCCTTCAAGTTCCAACTAGTTCTTCAGTTGCTAAACTGTCATCGAAGACCACAGAGAACAAGCCAGAGAGTGATGATCAAGCTGTTGGCTCGAGTGAGCCAGAGAGTGGATCAGCAGAAGGAGGAATGCCAGAGTCATCTACTGAGGGCAAGGCTGTTAATGGAAGTATGGAGGAACCAGTGGCAGCTTCTTCTACCGAAGGAGCAGAAGGAAAATCTCAGCCTGAAACGTCAACAGCTGAGGGAGATGTACTGACTTCTTCCTCTGATCAGCAGGAGGCTTCAGCTTCAGATGGTGCAGCAGCAGACTCCACCCAGAGTCCAGACTCTAAGAACCAATTCCCTCGCGAGTCCTCAACAACTGTCTCTGGCTCGGATAAAACCTTGAAAGTAGTAGAGCAAGTTGGTAGTTCTGACAATGTTGTTAGTATTGTCAAGAGTTCTGATGACACAGAAATGATACCAGCCTCCACAAGTGATGGTTCCATGGAGCAGGGTAAAGAAGCTGAAGTTGCCGCTGCCAAACCCACCATTCAGGATTCTCATCCCACTCCATCACATGACCTGCAGAGCATGGAAGAGCCACAATCAGGACCAGAAGACTCCAACAAACTTGCGGAAAAGAAAGAAGTGAAGGAGGAAGAAAGCCCTATGAAATCTATACCTGAGAAAAAGTCAGATGCAAAAGAAAATGCTGTTGAAGAAaaagaaaaGGACACAGCAGACGTCACTGCAATGGAGGAAGGTGaagaacaagaggaaaaggagaAGTGTGTGGTGACACCAGGAGTCATTGAACCCCGCCCACTTCACAAGACTTACTCTCTCTTTATAAGAAATGTCCCACCAAATGTTTCCAAGGCTGACGTGGCTGCTGTTTGCAAGAGATTTGCTGGCTTTCTCAGGATTGCTCTTTCAGATCCAAGCCCTGATAGAAAGTTTTATCGTCGAGGATGGATTACCTTTGATAGAAGTGTCACCATTAAAGAGATATGTTGGGATATTAATAACATAAGAGTCAAAGACTGTGAGTGGAACCCGGTGATAAACAGGGATCTGTCCCGACGCGTCCGTCCAGTTGCTGGATTTACTGTTGCGAAACAGATAGTTCGTGATGACATAAAACTTGCTGCAAGAATAATTAGAGAGTTGGACAAGAAGAGCAGACTATATGAAATTGAAAAGATTGAAGAAGTGAaagaaAAGGAAGTGGTTGAAaaaaaggaggaaggtgaagaaggagaggaaaaacaatcagagacagaagcagaggaGATTCCAGTTGATCTCCCAAAAGAAAATCCCATTTTGGCCTCACTTTGCGAAGATGCCGCTGAAGAGGAggaaggggaggaaatggagCTTCTTGGTACAGCATCCCCCACCAGGGACAGTGGTTGTGAGAAGTCTGAAGTTGATCTTACCCGTGACGAAACTCTGCTGAAAGTGCTGGATCGTTTGATCCTGTACCTGAGAATAGTGCACTCCCTTGATTACTACAATGGCTCAGACTATCCCTACGAGGACGAGATGCCAAACCGATGTGGAATCATCCATGTAAGAGGTCCAATGCCAGAGAAAGCTACACAGGCAGAAGTGAGTGATGGACAAAAGAACCTGAAGAATAAACTAGAGCCCTTCCTACAACCCAAGACGCTTCTTTCAGATGAGGAAGTTACCAAGTTTGGAAAGAAGGACCCCGAGTCATATCCTTCTTCAGTTGATTTCAGCTGctgttgttgttCCTTGACCATTCCAACTGAAATAGAAAAATTTGTGCAAGCCAACACCCAGGAACTGGCAAAGGATAAATGGCTGTGTCCTTTGAGTGGAAAGAAGTTTCGAGGTCCAGAGTTTGTCCGTAAACACATTTTCAACAAGCACATCGACAAAGTTGAAGCTGTAAGAATGGAGGCGGAGTTTTTTAATAACTACATATCAGATCCCAGTCGCCCACAGAACCCAGAGCCGTCACAACAGAAGACATCAGGCAACCAGGGGGGTGCAGTGGGCCAGATGTACGGTGCACAACAACACAGCCCAGCTATGATGGGTGGGTGGGGTCGTGGACACCATGCTATGATGTATGGAGGTGCAGGCCCCCGTGGTCCATACACACCTCAGTACAGTGGCCACAATTATGGGCCTGGGCACGACATGTACGGTGGCCGTGGAGGACACACGTATCCTCCCAAACCTCGCCGGTTCGGTTATGGTGGAGGCCGCAACAGGGGAAATCAGAGTGGTGGATTTCATCGCGACCCTCGACCAATTGTGCAGTACAAAGACCTTGATGCACCAGAAGATAACGACTTCTAG

Transcript

c1195.g003.t1

Protein

Uniprot

Uniprot term	Description
Q6INH5	Serrate RNA effector molecule homolog B OS=Xenopus laevis OX=8355 GN=srrt-b PE=2 SV=1
Q9BXP5	Serrate RNA effector molecule homolog OS=Homo sapiens OX=9606 GN=SRRT PE=1 SV=1
B4KLY7	Serrate RNA effector molecule homolog OS=Drosophila mojavensis OX=7230 GN=Ars2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04959	ARS2	Arsenite-resistance protein 2	Family	Interproscan
PF12066	SERRATE_Ars2_N	SERRATE/Ars2, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039727	Family	SERRATE/Ars2	Interproscan
IPR007042	Domain	SERRATE/Ars2 , C-terminal	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021933	Domain	SERRATE/Ars2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13165	ARSENITE-RESISTANCE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27103	SRRT, ARS2; serrate RNA effector molecule	-	Messenger RNA biogenesis	ko03019	deepkoala