Gene detail

Detailed information of c1237.g005.t1 in Palythoa umbrosa

Genomic Location: c1237:44419...50851
NR annotation: XP_022787724.1, uncharacterized protein LOC111327745 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1237.g005.t1

ATGCAGGCAGCAAAATCGACCAGAAACGAAGaagatgaggagAAAAGCAGAGCAGAAATGGCAGAGAAAGCGAGAAGTGTTGTGGTGAGAGGACTGCCGTCTGGCACCACAGCGAATGAGGTTGTGATCTATTTTCAGAagaagaaaaataatggaggagAGGTAGAAAAAGTGAAACTAAACGAGCAAGATGGGACAGCGATTGTTGTATTTGAGAGTCCTGAAGTTGCAGAAAAGGCTCTGTTAAAGCAGCACAAAATTAATGAGGTCACCGTAACAGTTGAGTCGCCGTTCAGAGTTTTTGAGAGAGTGACAGCACAAGTTGATTACAGAGCTTTTGGTCTAGACGAGAAAGACATGGAACACCTCATAAAGGAAATTAGCAAAAAGACAAACATTGATGTTCACATTGCAAGTTTTGGAGTTTTAATTTCTGGCTCGTTTGAACAAATTGCTTCCTTACGCCGGCACCTTCAAAAACTAGGAAACAGAAATCAAGGTCAAATATCTCCTGGGGAACCGAAACACAGCAGTCAGCTATCAAATGTAACACATGATAAAATGCATCGGAACTCGACAGAAATGCAGGAAGCTGAAAAAAGAAATTCTAGCATGCTTGACCAGACTACGAGATTCACAGATGTTGATTCCGAACAAGGTTATGAAACAAACAAAACTTTCATGAAATTGTTTAAGAAAGCTCACCAGTCAGAACTAAAAaacttaaaaaaAGAATATAGTGTAGAGATACAGCACTACGATGACAAACAGGGTAAATTGAAGGTAAAGGTCGAACCAGGACGTACTACTACAACGACTCAGCTAAGTCTGGCCAGAGAGAAGTTTATTACACTTTATCAAAAactttttaaaaATGCTAAGTTTGTCCGTTTCAATGTCTGTGACAATAATCACGAAACGCAAGCAAAGTTGAGGCGGATAATTCATGATATGAACAAAAATCTTCCCGTCCTGATAGATAGGGCCGACGATAGACTCAGTTACCAAATTTATGGCGAAGAAGTTGAAGTTAAACGAGCGTTGAAAACATTGCATTCCCGGATTGATATCAAGATCAGGGACGACTGCGAAACCAATTCCTTTGAACCCAGAACATTAACTGAGCAAACCAGCACCTTTGATGCGGAGGAAGCTATGGAATTGGATAACGACCCGTTTGGACCGTGTGAAACTTATATTGGTGCAGTAAAAGTGTCCGTACTAAAGGGTGATATTACAGACCAGAGGGTCGACGCAATAGTAAACGCCGCAAATGAAAATCTTGACCATGGCGGAGGAGTGGCTGGCGCCATAATACAGAAGGGAGGCTATGACATTCAGGACGAGTCTGATGCAATTGTTTGTCAGTATGGGCGAATAGAGGTAGGAGAAGTAGCGGTTACTGACTCAGGTCGGTTGCCTTGTAAAAAGATCATTCACGCTGTTGGTCCAATGTGGCGGGTAGAGGGGGAACGGAGAAGCCGGGAGCTACTAAAGAAGGCTTGTATCAAGAGCCTGTTAAAAGCAGAAGGTCTCCGATTAAGTTCAATTGCTTTTCCTGCAATAAGCTCTGGAATATTTGGAATGCCTAGGGAGGTTTCCGCAACGGTCCTGTTTTCAGCTGTAGACGAATACGTTGCAGCAAGTAAAAATAGGAAGGATGTTGTGACTGATATCCGTTTTGTGATCATTGATGATCCAACAGTAGAAGTGTTCAAAGAAGAGTTTAAATTTATTTACGGTGGAATTGATGATGAAACGCCAGGTACGTCCAAGACGAGAAAGATAAAAGAAAGCCGGGAAAACGGTGTTACAAGTGATAAAGGAAATTCACCCAAAACAGAAAGCGATACACGTGGCTCACAAGAAAGACCCACAGAAAATGAACCAAATCGTGGAAGCAGAGACAAAGACCGATCTAAAGCTTTTACTCAAGAAAAGTTTGACAGCAACGTTCTGCCCAGTAAGATGGATAGAAATAACGACAGTGCCATGTCATACAGTGCAGCATTACAAGGACAAGGTATTTTCGAGCCAATAGGAGACAAGAAAGAAGTATGCCCAGTGTGCTTGGATGGTATCGTTGTACCAAAGACCCTAAAAAAATGTGGCCACACATTTTGCGAAGACTGCATTGATAAATCGTTCAAGACCATGGGAAAAAACTGTCCCGTTTGCAAAGAATCGTACGGTGTGTCCATTGGAAACCAGCCTCAAGGACGAATGCAGTGGCATTTGGATCAATATTGTACTGTTCCTGGGTATAGCGGTAGCGGCGTTATTATCATCGACTACCAGTTCAATGGCGGATGGCAGGGACAGGAACACCCGCATCCAGGAAAGTACTACACAGGAACAAGACGAACAGCATATTTACCAGGCAAGAGatacaatgcaatacaatacaataaataA

Transcript

c1237.g005.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q97UU4	Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1
Q9WYX8	Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1
Q8ZXT3	Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF01661	Macro	Macro domain	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002589	Domain	Macro domain	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan