Gene detail

Detailed information of c1347.g001.t2 in Palythoa umbrosa

Genomic Location: c1347:640...16734
NR annotation: CAH3020763.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1347.g001.t2

ATTTACCAAAGTATCAGCACAGAAGTAGAGGAAGCGGGATTAAAAGCAATCAGCAGTATAATAAGAAGTATTTCTGGTGATGGTCAGCCATTTGATGTTGATATATTCGAAAATATAGTGGACGTAATTATACGAGACTGTACACACTCTCTCCAAGACTCAGAGGAACTCAAGTTCTGGAGACCAAGTGGAAATATCCTATGTAAAATGGCAGCTGCATCTTCAATTTCCTGCAAAAGAGTTAGCAAAGCCTTATATCCACTGCTACTGAAACAATTCAATACATTTTCTCAGGCTTTGCACAGAAAAATTATCCTGGATCTGTTGCTAGAACTACTAAAGGTGTGTAAAGACTTCCAAGGCAAGAGTGAAGTTGATGCCGTATCAGAGTACAAAAACGACTTGTCAGCCTTATTATTCTCAACACTTGCCGACAACAGCCCCTCAATGCGACGTGCTGGAATTTGTGGTTTGGTTGCCATGACAGCCTTGCCTGGTATATTTACTAAAAAAGAGGTATCAGTGTTTGTTGAACACCTTACCAACATGGTACTGCAGGACAAAGATGCAACAGTGAGACAAGAGTGTACCATAAGTCTTGCCTTTCTGGCGTGTGATAGTCCTGAAGATGTCCAAAGTTTGGTTTTACCACCGCTTTTTCACAGACTCAGAACAGAAGATGGTACAGCAATGGAAACTGAAGCCCCACGGGAAACCTGTGTAGATCACAAACAAGTTCTGGACACACTTTCAGCTGTCTGCACTCACTCTACACTTGTAAAACGTGTTGTTCCTGAGCTTTTGCACCACGGAAAGAACATTTGTGGTCAAATTgaagaaaagagtgaagaaaCTGAAGATGTCCGTGCGTCTAAAACAGTTGCTGTCCTCAAATGCTTGCTCTCAGTAGTAGAAGGTGCTGTAGAGAGTGAAATTGTGGAAAGCGAATATTTTATTCAACACTTGATTCCAAATCTGCTGGAATTAACTATAAAGCCAGTAGCCTGTGGTTCAAATGACTCTAAAAGTGTTGTATGTAACTCAGATGTACTTGAAAATGTCGCGGCCATTGTTAGAACAATTACAAGAAAATTAGAAGTCAAACAAGCAACGCTCGTTTTGACTTTAGTGGAGAATCTTTTAGTTGATGGGAATCTATCCGAGTTGAATGTCGAGTGTAAAGAGAAATTTGCACCTCTCGATTTCGCTTCACCCGTGGAACAAACTCAACTTGTTTCTTTGGTGACGTCAGTGTTCTGTGCCGTGAAGAAAGAGGTACCCATTCCTCACCAGTCTACTCTTTTAAACAAATTGTTGCGCATGAGCCTTCATTGTTGCCACAGGTGGTCAGCAGTTGCTGCAGCCAAATGTCTAGCTGGATTAGTGAACAGAATGGAAGATGGTGAGGAACTACTCTCGCTGCTCAACGAAGTCAAAGAAGATGTTTTTCAGAAAAGCTTCCGAATTTCTGGTGAAGAAGCAAAATGGAGATGCGCAATTACTTGGATTTGGCTTACAAAAGCTCTGGCTTTACGATCGCACAATACGTCACCAGAGTTTTTAGAGAAGCTTATAAGTCTTTTCATCGATGATGACGTTGGCCGAGTCGCAGCTGATGGGTTTTACATTATCATGTCTGACAATGAAGACGTTATGACAAAAGCCATGCATGCAAATATTAAGTTAATGTACAAGCAAAGATTGTTCATGTCGACTGTACCAAAACTGGTTGAAGGCTTCCATATGGCACCTTCTGAAGTGAAACACCATTACCTGTGTGCGCTGTCGCATTTGTTGCAGTGGGTACCAAAACAGGTCCTCTTAACAGAACTTCCCAGTCTGATGCCGCTTCTGGTTCAGTCACTGACACAAAAGGAGAAAAACTTACAGCTATCAACATTAGAAACAATTTATAGTCTAATCCTTGATGCTCCAGAAATCATCACCAGACAAGTGACCTCACTTATACCACAGTTTCTGGGACTGAGCAAGTGTGAATCTTCTATGAAAATTCGGAGCCAGGCCTTGAAGTGTCTTGGTGCAATGACCACTCTACCGCATCACGTGGTTTATCCTTACAAGAACAAGGTGATAAGGGCCCTAGCGGATAATTTGGATGACAAGAAACGTCTGGTGCGACAAGAAGCGGTTAAGTGTAGAACAGAGTGGTTTCTTCTCGGTAGTTCTTCCAGATGA

Transcript

c1347.g001.t2

Protein

Uniprot

Uniprot term	Description
Q6DCF2	MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis OX=8355 GN=mms19 PE=2 SV=1
E1BP36	MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 PE=2 SV=3
Q9D071	MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms19 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12460	MMS19_C	RNAPII transcription regulator C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024687	Domain	MMS19, C-terminal	Interproscan
IPR039920	Family	DNA repair/transcription protein MET18/MMS19	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0097361	Cellular Component	cytosolic [4Fe-4S] assembly targeting complex	Interproscan
GO:0097428	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15075	MET18, MMS19; DNA repair/transcription protein MET18/MMS19	-	DNA repair and recombination proteins	ko03400	deepkoala