Gene detail

Detailed information of c1392.g002.t1 in Palythoa umbrosa

Genomic Location: c1392:5001...10107
NR annotation: XP_015780175.1, PREDICTED: uncharacterized protein LOC107358059 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1392.g002.t1

atggaagatttgtacctaaaatacccggaaataccggatctgcttgactatgagagttttcagacgtgtgtgaatcgggacgatacatttagcttgcaagtgggaaaccaaatcaaacgcttgattaagaaaggtgttccggtggatgttgagaaagatggatggactttccttcatactgcgtgtgcgatgggcaatgtagagctgatgaaatttctaatacatcaattgcagaatgagcggttgcgtgagattgtcgtgggtgtatcttggttcaatacatctctgctgcacgttgcttgtaaaaacccacataagtttacaaaagaagtgtgtgaagtcttgctggagtatggagctgaagtcaatgctaggggtggatattatgatggaacacccttacattgggcctgcgaaaacagctgtgaattcacaaaagaagtgtccacattgttactaaatcacggagccgatgtcaatgctgaagataagtataaaaatacacctctgcacctggctttgagagaatctgGTGAAATGATGCGAATGCCAGTTAAAGGAGCCACAATTAAGTCAATCAGTGAAGTCTTGTTAAAACATGGGGCCAATATCAATGCTCGTAACTGTGAAGGAGAATCACCAATTGCTTCCTTCATAAGATGTCTTATTTCAGGGTTGACTTACATTAAAGATGACAGGACTCCAACACAGCAGGAAGTTGGAGTACATGAAGAAGCAGTTCAGTCTACAGATAAGCGACAAAATTTGTTTAGCTCTGCTGATATCTGTGACTGGTTAATTAGTTTAGGCGCAGATGTAAATACCAGATCAACAGGATCTCAAACATTGTTTCATTTCATGGTAGAGCACTACCTACAATCATTTTATAAACATATTCAATttaattttaaatttCCAAAAGAACTTTTGAGAGTAATAACAAAAAATGAAAATGTAACACTTACTTTGAACAGTAGAAATGAAGAAGGAAATACCCCCCTGCATACTACATGCAAACTTGTTCCACAAATCTCAAAACTTACACccacacacagagaaaAGTACAACACCATGATAGAATCTTtgatggaatgtttaaTTTCCTGTGGAAGTAAAGTGAATGCTCGTAACGATTTGGGACAAACACCTCTCCACCTTTCATCAAGTGCACCTGTGATAAGATATCTGCTCAAATCAGGAGCAGATGTAAGTGTCAAAGATGAAAATGGGAACACTCCACTGATGATGTGGGTCACATCCTGTGATGTCGCTGATCTTGATTCTCTCTGTTCCTCACCAACTGATCTGAAAGAAATCATCGATCATGGAATTGATCCTTTTGTTGTAAATACTGAAGGTGACACTGTTTTAGATATTACCTTTTCAAGACAACTGTTTGGGTTTTTGAAGAAATTTCTTAAAGCAGTGCTGATTTCTGACCCAAGAAACGTTAATCGATGCGACACCTTTGGAAATACCTTTTTGCATGTTATGGCTGAATGTGATGATGATAGAGTGCAGGAGTTGATCGAGATGCTGTTACGAAAAGGAGCAGATCCAAACTGTGTCAATGAAAAGGGGGAAACGCCAATGCATATTCTTTGCAAAAAGGTTGTCGAGAGTTATAAAGATCAAACGAGCAGAAACATGCAGGAAACAAAAAACGGCAGAGAAATGTCAGCTGTGCTTGATCCAGATAATGTTCACAATGACAACaacaAAGAGGATGGTGTTAAGAAACCAATAAAAGAAAAAGAACTAATGGAATCAGTCAGTGCATGGGCCATTAGCTTGTTCAAGAAATATGGGGGGGATCCACTGAAGCCAGATGGCAATGATAAAACTTCTGTTGATATTGCAAttggaaatcagcccgagTTTGGAGAACCACGCCCTGTTGCTACAGCTCGAGGGCTGACATCTGTTGAGTTAGACCTTGAAACTGAACTCGGTGCAGAATTTTCCTTCAACCCGTGGGATACCCAGATTGCACAGATTTATTTAGAAATGACATCGACGCCAAGGCCCAGGAGGTACTGTACAACCTCAGCAGTGGATCTGGTGAGATTTCTGAGGAACTCCTACTCACACGTGTCAGGCGCAACTCGACCTACAGACTTCAAATTAGAACTGCTTGACAAGTTTGTATATTTGGACAAATTTCCCGCGCTGCTCATCACTGTTTATGATATAGTGATGAAGTATGCCTGGAACAGTCGAGAGGAGATTAACTGTGTTCTTCAGAAGTACTCTTAA

Transcript

c1392.g002.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06479	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR010513	Domain	KEN domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038357	Homologous_superfamily	KEN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24178	MOLTING PROTEIN MLT-4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0097543	Cellular Component	ciliary inversin compartment	Interproscan
GO:1904108	Biological Process	protein localization to ciliary inversin compartment	Interproscan