Gene detail

Detailed information of c1500.g003.t1 in Palythoa umbrosa

Genomic Location: c1500:16739...22585
NR annotation: CAH3014779.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1500.g003.t1

ATGGAAACAGCGATCCCTCTGTGTCTTCCGGATAACTGTTCTTGGGACGAACACTCGCAGCAGTACACCAGACACACTAAGAAGCGTGCGCACGGGGACACTTTAAGAGTAATAGACGCCGCCCGGCGCAAACTTCGTGCCATCAAAGGTCCTGTGTGTGTGGTGACGATCGCGGGCCCATGTCGCAGGGGCAAGTCCTATATCCTGAGTAAAGCTTTCGACCAGGGGGAGGTGTTTCCTTTGGGTCATCTACTTGACCCTGAGACCATGGGTATCTGGATGTGGGTGGTGCCGGAGAAGTACACTGACAGGAATGGTAAGGAATTCACAGTGGTGCTGCTGGATTCTGAGGGAATTGACGCAGTTACATCAGAAGATACAGATGATCATAAAATCTTCACCCTCAGTGTGTTGCTAGGATCCGTGTTGATATACAACTCTGCTGGAGTCCCGACACGTACCGACCTTGAAAAGCTAGAGTACATTGCTAAACTAACCCAGAGGATACATTTATGGGCAACAAGCAAGGGAGCTAGGCAAGAGAGACGACCCAATTTCAGCAAGACTTTTCCTTACTTTGTCTGGCTTCTGAGGGACGTGCTGCAAGCCTTGCCATCTGAATGCCGCACAATCAAGGAGTATTTCCTTCAAAGGGTTTTCAACGCACAACTTGACTCCAACGAAAAAGCAGGAAACGTTGCAAAGAGTATTTTGGACCTGTTCAGAGGTTTTGACGCCTTTGCACTCCCACCGCCGTCGGTCATTCCCGACGTGGTGAATCGAATAAACGATTACGAAATTCAAGAGAAGCTGAATCCACAATTCATTGCGGGTGTCAAAAAATTTTCAGCTTTACTTGGCGGAAAATTATGTCCAAAGACGAGCTTTAATGACGGTGAAATCGTCACGGGAGAAGCCCTCGCAGCCCTGTTGGACATCTATGTAGAGACTCTGAACACGCCGGGAGCTGTACCGAACGTTCAGAAGGCTTGGGAAGTTTTTATTCAAAGCAAATGCACCGAATCGAGCAAGGCGGCCTTGAAAATGTATGAAGAAACAATGAAATCGGTCCAGGAAGTACTTCCGTGTAGAAACGACGAAGTATATCGGTACCACAGAAGTGCCTGGGACAAAAGCCTCAAAGTGTTTAAATGTGAAACTGATGGTATCTCTGCTGTCAACACCGACCGATACCTCAAGGAGCTTACGGCTGAAACCGACAAGCTGCTTATACATTGGCTGGAATTGAACAAGCGTCTCACAAAGGAAGCGTGTGAGCAGCTTCTATTGCAGCTGAAAAAAGGCATACTGGAACCAGTCCTAACCAAACTTGTTAGCGGCCAGGCATCCTCGCTGACGTTTGAAAATATTGTTCAAGCCTACAACTTGATTGAGTCCAAGTACAACAAACGCGCACGGGGAGCAGAGAATGTTTGCGCAAGCGTGTTTGCAAACTTCCAGCCACAACTGAATGCAGAGATGCAAAAACACGTCCAGTTATTGCAACAGTTGAAAGATTACGATGCAAATATTGCTAAAGAAAGAGAAGATCGCGCCAGAGAAGCGGAAAGCAGAAAGTTGCTTGAGGAACAAGTCAAACTGTTGAAGGAACGCAAAATCCAAGTGGAAAAAGAATCTAAACTCATGGCGGAGAAGAAAGAGAaggatgaacagcgcatgcgcgagcagcatcaacagcagctgcaggctcaacaagaacagtataaaaacatgatggaagccaagatggatgagctcaggcgtgaaagagaagttatggcgggaaagaatgacaacacggccggattcatcaaagtgatgggcgaaatgctgaagtcacgtgaccaggaagtgtcgcagttgacCCAAGCTGTGGTTGAAATAGCAAGCAGGCCTCCAACAGTTATCGAGAAGGATTCTGGTGGTAGCTTTTTGTCTATCATTCCAGAAACTTTAAAAGCTCTCGGTTCACTGTTTTTCTCAAAAAAACCATAG

Transcript

c1500.g003.t1

Protein

Uniprot

Uniprot term	Description
Q9VC57	Atlastin OS=Drosophila melanogaster OX=7227 GN=atl PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20899	GBP1_3_4_7; guanylate-binding protein 1/3/4/7	-	NOD-like receptor signaling pathway	ko04621	deepkoala