Gene detail

Detailed information of c1770.g001.t1 in Palythoa umbrosa

Genomic Location: c1770:1442...19543
NR annotation: CAH3130563.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1770.g001.t1

ATGGAAACGAGACAACTTCAGAGGACTTTAAAGGTTTTTTTGGTCCTATTAATGGCGCTTCGCTTGATAAGGGGAATACCACCCGAAGGACGCGACCTTCATAAAATCATGACAAGAAAGGAGATGATTAGATATCTGGACGTCCACTCACAAGACGACGttccAGAATACGAAATCGCTTCCCTAGCTCCAACGCGAAATAAAAGAAGTACAAAAAAACACGATGGAGTCAAGTTCTCCGCTTTTCAAAACTCGTTTGACATCCAACTGAAACCCAGTAACAAGTTCATTTCGCCCAACCTTGTCGTTGACAAGCGACATAAAAATGGCGGCCTTACTCGTGAGGTTTACAAACCCAGTGGACAGTTTTATCACGGGGAACTTGCGTCCAACAAGAATTCGATTGTCGCAGTGAGAGATAAAGATAACACAGGGAAATTGAGTGGAACAATCGTACACGATAATTACATTTACAAAGTGGAGCCACTTCCAAACCATCTGAGTGCGCACGTGAAAGCAGGAAATCAGGATCTTCATATTATATCACGACGGAGTCTGCGCAGTGGTAAAACTAAGCGCTCACAACCTGTAAAAGTTCCTTTCGAAGAGTATACTACTGAGAAAGTACGCGCCAAAAGATCACAACAAGAACGTTTGGGACAAAAATGGATTGAAGCAATGATCTTAGCTGATAACACGACCGTCAGTTACTATGGCAACGAAACAATGGACTACGTTCTAAGCATCGCCAATTTGGTGAACCGGCTGTTTCAAGATCCGTCACTGGGTGTTAACGTTACATTCGCTTTAGTAAAAGTTGTCCTTATTCATGGTTATGAGCCTGAACTTGATTTCGTAAAACACAATATCGATTCAGCCAGTGACTATTTGCATAAGTTTGAACAATGGGCCAAGAAACGTAACCCTCATGTGGCGAACGCTCAACATTGGGACAACGCTGTGCTTCTGAGCAGGCGGCTTTGTGGACTCAAAACCTGTTATTTAGACGGACTTGCGCACTTCGGAGTACCTTGTAGTTCATCACTGGGAGTCTCCGTGAATGACGCACACGGAATTGGTTCAGCATTCAGTGTCGCACATGAAGTAGCGCACAATCTTAATGTGGATCATGACAGAGGTAATTGTCGTGGAGGCTCAATAATGGCGGCTGTTGCATCTACTAATACCAACGCTTTTATTTGGTCCAACTGCAGTCGAAAAGCCATGATGAAAACTATGAGGAAAGTAAGCTGTTATGACGACAGTCCCTCAAGTAATTTGGAGGTTCCCAAGAAACCGGCTGGTGTGCGATGGACGGGAGACAGGCAGTGTCAGATGATGTACGGTCCTGGTGTCAGCGAATGCTGGATGACTACGGGGAAGTGCCACGAGTCTCTTTTGTGTACAAGAGGTGGAAATTGTTTTGGCAGAGGCCACCCGCCTGCAGACGGCACAAAATGTGGGCTTGGAAAGTGGTGTATCAGAGGCAGGTGTGTGTCAGACGGCACAACGAGGCCGCCACCTATCGATGGAAGCTGGGGACCGTGGCAGAACTTCTCTCCCTGTTCGAGAACATGTGGTGGAGGAATCCGGCAACGTTCAAGATTGTGTAACAACCCCAGTCCGCAGAACGGAGGGAAAAGGTGTCCTGGAGAATCCAAAGGATATTTCGAAATGTGCAACTTAAGGGCGTGTCCGGAAGAGCGAAATTACAGACAGGAGCAGTGTGCAGCTTTTAACAGCAACACAACCAAGTATTGGGACTACTTCAGAGCTAGTGATCCGTGTTTGCGAGCGTGCCGAGTAGGAAATCATTTGTATATTAAAGGTCGGTTTAATGATGGGACACCCTGTTCTCTCGACCAAGCCGCTGATCTGAGATGCGCCAACGGCAAGTGTCAGGCATTTGATTGTGATGGTAAGCAGAGGAAAGCTGGGTCTAGAATTGCTGTGAGAGACCGCTGTAAAGTATGCAATGGAAAAGGCGATCGCTGCCGTCGTGTGTACGGAAGATTTACTCGTGAATGGAAGTATTGGG

Transcript

c1770.g001.t1

Protein

Uniprot

Uniprot term	Description
O15072	A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens OX=9606 GN=ADAMTS3 PE=1 SV=4
P59510	A disintegrin and metalloproteinase with thrombospondin motifs 20 OS=Homo sapiens OX=9606 GN=ADAMTS20 PE=1 SV=2
Q9UKP5	A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens OX=9606 GN=ADAMTS6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17771	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan
PF01562	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF13688	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006586	Domain	ADAM, cysteine-rich domain	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR041645	Domain	ADAMTS, cysteine-rich domain 2	Interproscan
IPR013273	Family	ADAMTS/ADAMTS-like	Interproscan
IPR001590	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002870	Domain	Peptidase M12B, propeptide	Interproscan
IPR050439	Family	ADAMTS and ADAMTS-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan