Gene detail

Detailed information of c1827.g001.t1 in Palythoa umbrosa

Genomic Location: c1827:10747...29318
NR annotation: CAH3172634.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1827.g001.t1

ATGATATTAACCTTGTGTGAGGTCCAAGTCTTTGGAATTTACACAGACATCGAGTACTATTTGGAGGGGGGAAAACAGAGCTGCGACACGATTTGTCAAAAACACGGTCTTGAGTGTACACCATCTTACCATGGTTTCACGGATGCTACTACCATCGCCTTCTTCAGAGACAAAGGCAGAAATTGCTTAACTGGATTTCACACCGAtgtatatcaatacgATGATAATCCAGTGTACATCAATGCGAGAACAGGCTGGGGAGGACGATGTGTGGGCTGGAAGAATGTCCCCATAAAGATCAAGTGCTGGGTGGCACCAGGCAGAGATTACATTCAACGCTTGTGCCCCTGCATTAAAGGAACATGTGTAAGACATTGGCGAAGATTTGGATCCTCTACTTACAAGATTTGCACTATCCAAAAACAGGGCTGGATTGACGCACAAGCAGCGTGCCAAAATATGGGTGCAGATCTAGTAAAAGTTGACACGAATGCTGAAAATGAGTTTTTGAAAAATTCAACAAGAAATTTCAACATGCGGAGTATATGGCTAGGCTTGAAAAGAAACTGGGATAACCTCTTTTACTGGCCAGATGGTTCCAGACCACAATATTCTAACTGGCTTCCAAACGAACCAAACCATTATGGTGGGGAAGAGTTTTGCAGCGAAGCAGTTGATGGAAAGTGGAACGACGACCAAAATCATTCTGGCCAGTATGGAATCCTGAAAAAATCGTCAAGAATATGGTGTCCACAGAGTAACTCCACGGTTGAGTGGCTCATGGTGGACCTGGGAGCTCCGTATTTTATCTGTGGAGTGGCGGCAGTTAATGATTTTAGGAATGGGAACCATACAGCTGTCACGTGGTACAAGGTCACCATGTCCCTTGACGTCATTGCTGGAGATACAAACAAAACCATCGCTTTGGAGGAATTTCAAACAGACAGTAACTATGACAACCATACGGTCAAAGAGCTTCATGGGATAGCAAGGTATTTGAGGTTTTCCCCAACTCGCTGGGTTGGTTGGCCGTGCATGAAGATTGCTGTATTTGGCGATGGAAAAGCAAGACCGATTAACCTCAAAATAAACTCTCCCGTTCATGCCACTGTGGGCCAAGATACTATTTTGTCATGCGAAGGCGTCGCCCATCCAGCTGCGAACGTGACATGGACCAAAGAAGGCAAGATAATCTCAGACAAGAAATATTCTGTTAATACTGAAACTATCCTGTCAAGCAACAAAATAGCCAGTAACCTGACAATCCACAACGTTTCCGTGTTCGATATGGGACTTTACATTTGCAGCTTCAGTAATTACCTTGGATCAATTGATGGGGAAATTCAAGTCGAGGTTATTGAAGATTGTCAACCCATTGTATTTGACTTCGAAAACGGCTCGGCATCTTTGAATGACTGGGGAAGAACAGGAAGTGCCTTTAGTAACCAACCAACGTATGGTGATAATATCAAAGTACGAGATCCCAGTAAGTCAGCTAATCAACAAGGTAACTACTGGATCGGAAGCTTTGAGAATAGGCGGAGTCCATCATCCCCTGCAGGATTGACAGCTGGTAATTCACCCCAGGGAACTCTGACTTCACCAGAATTTAAAATAATAGGTCCAAGAGTGTCATTTCTTCTTGGAGGAAGTTGTTATACTTCACTGTTACAACTGCTGGTCGGAGGAAACGTTGTTCGTTTTATGTCTGGAGATTGCAAATATGGTATGAAAAGAAAAAGCTGGGATCTACAGAGTTACATAGGGAAGAGAGCACGATTGCGATTGCTTGATTTTTCCAGTTCCAACTGGGGCCACAGCAGTTTTGACGACTTTCGAGGAGACATTGTTATGTGTAAAGGTTGCTCTCAGCCTTTGGGAATGACTAATAGCCGATTAATTCCGGATTTTGCCGTATCTGCCTCGTCCATGTGGGATTCTAACCATGGTCCAAAATTTGGACGACTTTATACTTTAAGAAGGAATGGTCATGTAGGTTCTTGGTCGTCACGGCGGAATAGAGTTGGCGAGTGGATTCAGGTTGACATTGGAGAAACTACTATTGTTACAAAGGTTTCAACACAGGGCCGAAAAGATTACATGCAGTGGGTAAGGTCGTATTACCTGGCATACTCAACAGATGGTGGAAACTTCCAACGGTACAATAAGATACTGATAGGTAATAACGATCGTAACACCATTGTGGAAAACGTCTTATCCTCCCCAGTTCGCGGTCGATACTTTAGAATTTATCCCCAGTCCTGGTATCGCCACATATCATTACGGATGGAGTTGTATGGCTGTCCTCCAAAACCAGCCGCTCCAAAGATCCAGCATTACGGTATTATAAACGAAACAGCTGTCAATGAAGGACAGAGTGTGACCCTTTACTGTGCAGCGAAAGGTTATCCTTACTTGAGCTACAAATGGCATAAGAAAGACGGGAAAGAAGAACTTGCAACTGGGCAGCGGCTCCCTCTTCTTAGTGTGAGACCAGAAGACGATGGTGTATACGTATGCACGGCCTTCAATGCCGTGGGCTCAGATAAATTGTTCATACAACTCCACGTATACACAAAGCCATCTTTCAAGACTCATTCTTCACCTAATGTGAATGTGGCTCGTACCAATCCTATCGTCATTCACTGCGATGCCACGGGCAAACCTAACCCAAAAGTGGTCTGGATAAAAGACGGTGTTCGCCTGGACCGAACGGCACGAATCCGTTTTCAAAGTAACAAACAAATTCTTATCATAGACAAAACAGAGGAAGAAGACTCGGGGTTGTACATGTGTCAAGCACAGAACGTCTTAGAAAATATCACGGCTACCTTTGCCgtgagggtatttgCAAAACCAAGCATAAATAGAATTCTAACAAGAACCCAAGTCACCGCCCTGTTTGGTGTTCCAGCTACTCTGATGTGCTTCGCCTCCAACTCTCTGCCTGTCCATTATTCATGGTCTAAAGATGGCAAAGTTCTCAGTGACACTGAAAACATTCAAGTGCACAACAATTTCTTAGTCGTGAAACCACAAAAGCCGAAAGACCTTGGAATTTACGTCTGTCATATTTCCAACATCGCTGGGAATGCCACGGAAAGATTCAACCTTTCATTATCCTTATCACATCCCAACTCCTCTGCGCCAGGCGTCAGGGCTGAAGCCAGCAGATCTGTCCGTGAGGGGGCTAGACTCAAGCTGTCAATCCTGATACCActggtcctaGTGATCCTGGTACTAGTGGCTGTTATCATTGTCCAAGCGTACCGCCATAGGCACTCTACCACACTTGCGTTCGCACCAACAGACTTCATAAGGATGACGACAAAGGACAAGGACAGGGGGGACCAACTTTTGAGTGACGAACAAGAAACCTCGCATTAA

Transcript

c1827.g001.t1

Protein

Uniprot

Uniprot term	Description
Q8WZ42	Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05028	CLCA2; calcium-activated chloride channel regulator 2	-	Ion channels	ko04040	deepkoala