Gene detail

Detailed information of c1850.g002.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: XP_018636570.1, crooked neck family 1 protein isoform 2, putative [Toxoplasma gondii ME49]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q4WT84	Pre-mRNA-splicing factor clf1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=clf1 PE=3 SV=1
Q5BDX1	Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=clf1 PE=3 SV=2
P63154	Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045075	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan
IPR008847	Domain	Suppressor of forked	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000245	Biological Process	spliceosomal complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071014	Cellular Component	post-mRNA release spliceosomal complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12869	CRN, CRNKL1, CLF1, SYF3; crooked neck	-	Chromosome and associated proteins	ko03036	deepkoala