Detailed information of c1857.g002.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: CEL65631.1, TPA: DEAD/DEAH box helicase domain-containing protein,putative [Neospora caninum Liverpool]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
F4JAA5DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1
O59801Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1
Q15477Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050699FamilyRNA/DNA HelicaseInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12131ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0055087Cellular ComponentSki complexInterproscan
GO:0070478Biological Processnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12598MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1EC:5.6.2.6
Transfer RNA biogenesisko03016deepkoala

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