Gene detail

Detailed information of c1868.g001.t1 in Palythoa umbrosa

Genomic Location: c1868:4782...27712
NR annotation: XP_015777689.1, PREDICTED: uncharacterized protein LOC107355612 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

c1868.g001.t1

ATGAAGGCAGATTTAAAAGCATCGGCAACTACTTTAGTTGGAGGAGGATGTGGATGGGATAAGTCGGATGGTATAAACTGCAAACCTAAGGGTCCAGAGAAAGATGAATGCCCAAAGTGTCCAACCTCAACGCCTTCAACCACCCCGTACATTAGCACTACTCTACCGACTTCTATTACGCCAACCACGATCGAATCATGCCAGTGTGAGGATGGAAGGGAGGGCACAATGACACCTGAAGGATGCGAATGTCCCAAATATTGTCCAAATGGCGAGAAACCTCTTTGGCAGAACAACGAGTATAAATGTCCAGAGCGTGAACCGTGTGGGGAAGCTCTCGCCTGTGTGACAGGGAGGAAAGGACAACAGTGTAAACAACCGGATGTGACTCCCTGCCCAGCTGATTGTAATGGCAACGGAAGACTAATAGTAACAAGTGAGTGTGCGTCGCATTGTTCCTGTAACCGACAGTGGTTTGGGCAATGCTGTGAGAGGCggagaccctggagagaatggGGTGATCCCCACTTGTCAACACTCGATGGCAATGGTTATGACTTTTTTGAAATTGGCGAATTCTGGGGATGCAAAAGTGTTTTCAACGACTTTGGTCTTCAGTTCCGTTTCTTCTACTACAACCGGGCTTCGTTAACGGGGGGCATAGCTATAAAGGCGGGAAAGAGTATTGTTACCATAGTAACAAAACGAACGCCCAATCCAACAGAACATCCACATATAAGAATTAACGGCAGGATCGTGGTTGTCACTTTTGGTTCAAAACAAAAACTGGACAATGGCACAGTACTCATGGATGTCCAGGAACGCTTTAGTAACGACACCGAAGGAACAGATGTACTTCTTTTATCATTTCAGAACAATAACGGTGTGTCGATATCTGTCGATGTAAGGTACAGCAAGGTAATGGAAAGACAATTTCTTAATGTTATGTTCACCCCCACACTACCCTTCAAGGGACGAACGGAGGGCTTGTGTGGTTTGATGGATGATGAAACTTCCAATGACCTTACTGGACCGAATGGGGAGCTGTACGATGATCCAGTAGAGTTCGGGAAATCGTGGAGAATCACACAACAGCTGAACGGATCGGGTTTGTATGACTCGTGGTCCTGGAACTATTCAAACTTTCATTCGGATGACGTCATGGACAGCACATACACAGACCCGTCCTTTGTGCCGGTTTATTCACTGGATGGTATTTCATCTGACGTCACCCAGAAAGCAATTGAACTATGTGACTCGCTCGGTCTGGAAGGAGACGATCAGAAGAGTTGTGTTTACGATGTGGCAGTAACAAATGACACAAGCTTTACACAGCAGGAGAACCTTCAGAAAGGCTGCGATTGCTCAGGAAAAGGTCGTTGTCTCAACGGAACGTGTCAGTGTATGGAGGGTTGGTCTGGACCCAACTGTGCTATAGGTAAATGCGCCCATAACTGTTCATCTGAGCATGGAGTGTGTGTAAACGGTTTCTGCCAGTGCGCCGTTGGTTGGGAGGGAGCAAACTGCGAAGTTAAAGCAACCTGTAACAATGTTAACAACTGTACCAGCCAAGTTCATGGTGTGTGTAAAACAACAGACCATTGTCAATGCAATAACGGCTTCACAGGCGCTGACTGCAGTATCGTCCCCACATGCTATAAAGTGGCTAACTGCTCCCAGCACGGTGTCTGTGTGGACTTTGATGTGTGCAAATGTGACAAAAACTGGAAAGGACAAAATTGTTCGCAGTATTCATGCTACAATTTGGATTATTGTTCAGGGCGTGGCCGCTGTGTAAACTTTAACAAATGCGAGTGCAAGCCAGGATGGACCGGAAGTAGTTGTGCTACTCCTGATTGCCCAGACGTTAACCAGTGCTCGGGTAACGGAGACTGCATAGACAGCAACATGTGCCGTTGCTACGCTGGTTACCAAGGGAACAATTGTAGCCACACGGCGGATTGTGCAGCACTGAGTAACTGTAGTAGCCAAGGAGTGTGCGTGACAAGCGATCTCGGAAACGCCACTTGCAGATGTTACCATGGTTTTACTGGATCAGACTGCAGCAAACCGCAGTGCAGTGGCGTAAACAACTGCAGCAACCACGGAGTTTGCAAGGAGGCCGATTTTTGCAAATGTGACGTCGGCTATGCGGGACTTGATTGCTCAAATTATTCGTGTGAAGCAGTGAACTATTGTTCTGGTCGTGGGAAATGTATTGGATACGACATCTGCCATTGCGATCCATTGTGGCACGACGCGGCTTGCAGCACTCCAGACTGTTCCAAAGTGAATGATTGCTCCAAGCAGGGCGTCTGTATAGCTCCTAACAGGTGTTCGTGTTACCCCGGCTTTGACGGCGTCTCTTGCAGTCAAAAGGCAAAACCTAATCTTCACCAACCTGTCTTTGAAAGGACTTCGTACAATGTTTCAGTAGAGGAGAATGTGCCAATAGGATTTTTTGTCCTCCGAGTCCAGGCAAACGACTCTGACACAGGAAGAAATGGTGAAGTATTGTATTCGCTTGTTCAAAACCAAGATCATAGCTTGTTTATGATCGACGGAACTTCGGGAGAAATTAGGACAGTGAAGAAAATTGACTATGAGAGCCTAACTTCCAAACTGATTCCGCTGAAAGTGATGGCATTTGACAACGGGCTCCCCCAGAAGTCCTCCAGTGCCTTTGTGTACATTGCTATCATGGACAAGAATGACAATTGTCCTGCGTTTGATCCTTTACCAAGTAAGAACTTCAATGTGTCTATTTACGCTTCTCCTGGGACTGTTGTCACAATAATGACAGCCCACGATCAGGACAGCGGTTTGAATGGTGTTGTCGATTACAGCATTCCCAACTTTGAAAAAGTAGGGAGAGCGTTTTCAATAGGCGAGACTACTGGACTGCTTACTGTATCCGCACCTTTGACGATTGGCAGATATGACTTTAAAATTCAAGCTCGCGACAGAGGATTTCCACCTTGTTCTCGTAGTATGGACATATTAGTAATAGTAATGGATATTCCATCTGAAACTCCGCCAACGAAagTGTTATCGACGACAACTAAAGCGAAGGAAGTTACAACTAAGTCAATTGTGACAGCAAAGCCAAGGAGCTGGATCGACAACCCAAAAGTTAAAATAGGAATGGGCACCGGGGCGTTACTATTGCTTTTAATTGTGGTCATTGCAATTGTAATTATCCTGAGAAAACGTCATGTTTCTCCCGCCAAGAGTCCTTCAATCGGCAGCTCGCAGCTGCACGACCACGCTAACGGTCGCATCAACAAGGGCATGGAGATGAAAGAAGTTCAAAATTCTAATTGTTAG

Transcript

c1868.g001.t1

Protein

Uniprot

Uniprot term	Description
Q8BNA6	Protocadherin Fat 3 OS=Mus musculus OX=10090 GN=Fat3 PE=1 SV=2
Q8R508	Protocadherin Fat 3 OS=Rattus norvegicus OX=10116 GN=Fat3 PE=1 SV=1
Q9Y5G0	Protocadherin gamma-B5 OS=Homo sapiens OX=9606 GN=PCDHGB5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07974	EGF_2	EGF-like domain	Domain	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR051216	Family	Teneurin domain-containing protein	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11219	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007154	Biological Process	cell communication	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0042803	Molecular Function	protein homodimerization activity	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0048666	Biological Process	neuron development	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan