Gene detail

Detailed information of c2154.g001.t1 in Palythoa umbrosa

Genomic Location: c2154:812...14529
NR annotation: XP_044896715.1, deleted in malignant brain tumors 1 protein [Felis catus]

Gene Structure

More details in Jbrowse

Sequence

CDS

c2154.g001.t1

atgttaggttATTCTAAAGCTTTCAAGGTTAAACTGATTGTGGATTTTGATCAGTGGAGAGGTCCAGTGCTACTCACAAATGTGGCGTGTAAAGGTGACGAGCCATCATTAGCCAACTGCACTCACAGCGCTTGGGGAGACAGAAATTGCCAAACAGGAAGTCGACCAGCAGGGGTTGTCTGTGAAACAAACAACCAGGAGGGTTTCAGGTTGCGCCTGGTCAGCACCGGCATTTCATCATCGCAAggacgagttgaaatttattacagtggtatatggggtacaatatgcgatgataactgggacatacaagacgctcacgtggtgtgtcgtatgctgggattctctcgtgctatcggagcgatagggtcagcggcttttggtcagggaacagggcccattttgctagacgatgttggttgtcgtggtgacgagcaatccttatcaaactgtattcacaggggatggggaaaaaataactgtggccacaacgaagacgctggagtTGTGTGTTCTACAGAATTTATGGCATCAGTTAAAGTCCGTTTGTCGGGAGACTCTCGTTTGTTAAACCAAGGACTTgtagaagttagttataacggcacctggggtacagtgtgtgcagatggctgggataagcaggacgcagatgtagtgtgtcgtatgttaggttACTCTAAAACTTTAGTGACTACAACAATGGAAAACATGGATCAGAGCAGAAAACCTGTGTTAATAACAAAATTGGCGTGTAAAGGCAACGAGTTTTCGGTTGTAAACTGCACTCACGGTGGTTGGGGAATTGGTAACTGTGCTGGACGCAATCGAGCTGCAGGAGTTGTCTGTGACACAGCCAACTACCAAGATATAAAGGTGCGCTTGGTTGATGGAGGCTTTTCAGCATTGCAAggacgagttgaagtttactacagtggtatatggggtacagtatgcgatgataactgggacatacaagatgctcacgtggtgtgtcgtatgctgggattctctcgtgctatcggagcaataggatcagcggcatttggtcaggggacggggcccattttgcttgacaatgttggttgtcgtggtgacgagcaaaccatttcaaactgtagtcacagtggatggggaaaacataactgtggccacagtgaggacgctggagtTTTGTGTTCTTCAGAAAACGTGCTTGTAATCGGGGTTCGTTTAGCAGGAACCAAGCCTAATTCAAACGAAGGACGCGTGGAAGTCAATTATAATGGGACCTGGGGCACAGTGTGTGACGCTGGTTGGGACAAGTTGGACGCAGATGTTGCGTGTAGAATGCTGGGATACAAACGTGCTCTTCTTATCAAAACAAGATTAGCGTTTGGAGCAGGGACTGGGCCTGTGTTGCTTAGTAACCTCGGTTGCAGAGGGAACGAGAAATCGTTGGGCGAGTGTCCACACAGGGGGTGGTACTATGGTAACTGTGAACATTTGAATAGTGCAGCGGGTGTAGAATGTGATAATGGCAATTTCTTGGATATTAGAGTTCGCCTAGCTGCGAGTGGCTTCTCTTCGCTGGAAggacgagttgaagtttattacagtggtatatggggtacagtatgcgatgataactgggacatacaagatgctcacgtggtgtgtcgtatgctgggattctctcgtgcagatcgagcaatagggtcagcggcatttggtcagggaacagggctcattttactagataatgttggttgtcgtggtaacgaacaaaccttgtcaaactgtactcacagtggatggggaaaacataactgtggccacagcgaggatgctggagtTGTGTGTTCTACAGAAAATATTACTTCTGTTGGAGTTCGCCTCGCGGGAACCAGGTCCCATTCAAACCAAGGTCGCGTGGAAGTGAACTATAATGGGACCTGGGGCACAGTCTGTGACACTGGTTGGGACATGTCCGACGCAGACGTTGTGTGTAGAATGTTGGGATACAAACGTGCTCTTCTCACAAAAACAAGACTAGCTTTTGGAGTAGGGAATGGGCCTGTGTTGCTTAGTGACCTCGGCTGTAGCGGGAGAgagaGATCGTTGGGCGAGTGTCCTCATAGTGGTTGGTACAATGGAAAGTGTCAGCTGAGCATTGGCAGTGCTGGCGTTCTTTGTGATTCAGGTGACCAAATAAACATAAAAGTTCGCCTTGCTGGAAGTGTTAAGTCGTCAGTTCAAGGACGAGTAGAAGTTTACTTCGATGGGGTATGGGGCACAGTGTGCGATAATGGCTGGGACCTGAACGATGGTCACGTGGTGTGCCGAATGTTAGGGTTCACTCGCGCAGTTCAAATAAAACGCTCCTCATATTTTGGTCGGGGGACTGGACCTATATCACTGAACAATGTCCGTTGTCATGGTAACGAACATTCATTGATAAACTGTAGCCACAGCGGATGGATTGAGTCGCGGTACTGCGGAACGGACTCTGGAGTGGTGTGCTCTACAGAAAATATAACTTCTGTTGGAGTTCGTCTCGCGGGAACCAGGTCCCATTCTAACCAAGGCCGCGTTGAAGTAAACTATAATGGGACCTGGGGCACAGTCTGTGACACTGATTGGGACAAATCGGACGCAGACGTTGCGTGTAGAATGCTGGGATACAAACGTGCTCTCCTCACAAAATCAAGACTAGCTTTTGGAGCAGGGACTGGGCCTGTGTTGCTTAGTAACCTTGGTTGCACAGGGAACGAGAAATCATTGGGCGAGTGTCCACATAGTGGGTGGTTTTATAACGACTGTGGATATATGAATAGTGCAGCGGGTGTAGTGTGTGATACAGGCAACCTGGTAGATATTAGAATTCGCTTAGCTGGAAGCAGCCTCTCTTCGGTGCAAggccgagttgaagtttactacagtggggtatggggaacagtctgtgacaacggctgggacacgcgagatgctgacgtggtgtgtcgaatgctcggattttctcgagcagttcaagcaaaaagaggagcgttttttggtcagggaactgggccTGTTCTATTGACTAATGCTAATTGCCGCGGTAACGAGATCTCATTGGCTAATTGTACTCAAAGAAATCTCAACTCGTACTGTGGACACAGCCAGGATGCTGGTGTTGTGTGCTCTACGGAAAACGTAACAAAACTTGGTGTTCGATTGCTGGGATCGTATTTAACCAACCAAGGACGCGTGGAAGTAAATTATAATGGGACCTGGGGCACAGTCTGTGACACTGGTTGGGACAAGTCGGACGCAGACGTTGCGTGTAGAATGTTAGGATACAAACGTGCTCTCCTATTCTCAAAAACAAGACTAGCTTTTGGAGCAGGGACTGGGTCTGTCTTGCTTAGTAACATTGGTTGCACAGGGAACGAGAAATCATTGGGCGAGTGTCCACATAGTGGGTGGTACTATGGTAACTGTGGATATTTGAACAGTGCAGCGGGTGTAGAGTGTTCTTCAGATGTCGGTGTGTGGAGTGTCTTCGGATCGTGGAGCAAGTGCACCAAGACTTGTGGAGGAGGAAATCAAACGCGAACTCGTGTTTGTGTGAAAAAAGCTGGACAACCAGATTGTCAAGGAGCAAATACTGAAGTTCGAGTATGTGGTTTGATTCCATGCCATCAGATTCTAAATAAAGGGAGTGCTGGTTCAGCAGTCAATGTTCGTTTATCAGGAAAGTATCCTACCCCAAACCAAGGCCGAGTGGAAGTGAACTACAACGGTACATGGGGTACTATATGTGGGTCGGGCTGGACTAAACAGGATGCAGATGTAGTGTGTCGAATGTTAGGTTACTCTAAAGCTTTCATGGTTAAACTGATTGTGGATTTTGATCAGTGGAGAGGTCCAGTGCTACTCACAAATGTGGCGTGTAAAGGGGACGAGTCATCATTAGCCAACTGCACTCACAGCGCTTGGGGAGACGGAAATTGCCAAAAAGGAACTCAACCAGCTGGGGTTTTCTGTGACACAAACAACCAGGGGGATATAAGGTTGCGCCTTGTCAACAACGGAATTTCATCATCGCTAggacgagttgaagtttactacagtggtatatggggtacagtatgcgatgataactgggacatacaagatgctcacgtggtgtgtcgtatgctgggattctctcgtgctatcggagcaatagggtcagcggcatttggtcaggggacagggcccatttatctagacgatgttggttgtcgtggtgacgaacaaatcttgtcaaactgtactcacagtggatggggaaaacataactgtaaccacggcgaggacgctggagtTGTGTGTTCTACAGGTACGATCTTCCAATTGCTGAAGAGAACGgagtggtttcacatgacacatggcggccatgttgcaaccttggactaa

Transcript

c2154.g001.t1

Protein

Uniprot

Uniprot term	Description
Q9UGM3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Homo sapiens OX=9606 GN=DMBT1 PE=1 SV=2
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2
F7J220	Scavenger receptor cysteine-rich domain superfamily protein OS=Patiria pectinifera OX=7594 GN=SRCR1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001190	Domain	SRCR domain	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR050686	Family	SRCR-S1 Scavenger Receptor	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48071	SRCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13912	DMBT1; deleted in malignant brain tumors 1 protein	-	Salivary secretion	ko04970	deepkoala