Gene detail

Detailed information of c2166.g002.t1 in Palythoa umbrosa

Genomic Location: c2166:5879...10339
NR annotation: XP_015760956.1, PREDICTED: uncharacterized protein LOC107340119 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

c2166.g002.t1

ATGGAGAAATTTGTTCAACTTGGAAGAGAGTTTGGACTGGAAGGAGCTGAACTGCTCACATTTGTAAAAGAACGCGAAGAAGAAATTCGACAGAAGGAGATAGAAGAACGAGAAAACAGACGGCTTgaacgtgaacagaaaagggtagagttggaactggaaagagaaCTTttgaaaGAGAAAGAAAAGATTGAAGCCGCGAGGCGACAGCAAGAGTTGGagattgaaactgcgaggcgacagcatgagttggagattgaaactactaggcgacaacatgagttggaaatGAAGCGGCTAGAAATCGAGCAAGGTCAACAAGCCCCGACGGGTCAACCTTTAGCGAAAGAAGAGCGAGCTAAAGCACCGAAGCTCCCGTCATTTGTGGATGGAAAAGACGACCTTGACGCGTATCTACAGCGCTTCGAGAGGTTTGCAAAAACAGCAAACTGGGCCAAAGCCGGGTGGGCCGCAAAGCTGAGTGCATTGCTATCAGGGCGGGCATTAGATGTTTATTCACGACTTTCTGATGAGGCCGCGAGCGATTATGACCAAATGAAAATTGCATTGATGAAAAGGTATGACTTAACGGAGGACGGTTATCGTCGTAAGTTTAGAGCAACTAAGCCAGAGGTGGATGAGAGTCCCGATCAATACATTGTGCGATTGACGCTTTATTTGTCAAGATGGATTGAACTGTCAAAAACTGACGAATCTTTCGATGGGTTAAGAGATTTGATAGTCAAGGAACAGTTTATTGACTCCTGCCCCAAAGAACTTGCAATACACCTACGTGAAAGGGCTCCAGAGTCACTGGATGAAATGGCAAAGATCGCTGACCAGTACTTAGAGGCACATGGTAGGCGGCTGTTTTCTTCAGGACGCAAACAACCTATCCAGCCTGACAAGACACCTGCCGAGAAAGTAGCCCCAACTGATGCGACACAGATTCAATGCTATAAATGTAATGGCCGAGGACATAAAGCAATAAACTGCTCATCTACTTCGGTGAGACGTTGTTTTATTTGCGGTAAGCAAGGTCATGAGGCGAGAAGTTGTAGACTTCATAGCCAAAAACAAACAGCACAGGGTAAAGCAGCGAAATCAAGCTTATCCGGTCAGGTCAGTGCAGGGTGCCTTGTACCATCTCCCCTTTCCCAAGCTACAGCAGAGGAAATTCAATCGTGCATCAAAGACAATCAGCTGCTGCTGGCATGCGGCAAGAAAATTCCATTGCTCAGCAATGCTTGTATCCAACCCTTAACCGGAGCAAGAGCCAAGATGCCTGTAGTAAAGGGTCAGGTAAATGGAAAAACAGTCAGTGTGTTACGGGACACTGGATGCAGCGGCGTGGTGGTCAAAAAAGAGCTAGTGTCAAATGAACAATTTACCGGTGACTTTAATTGTATGCTGTTGATAGACAATACGGTTAGGAAAGTCCCGACAGCACGCATCACAGTGAATTCTCCCTATCTTTCTGGTGAAGTCGTGGCTCAGTGTTTGCCCGACGCCATATATGACCTCATTATTGGCAATGTACCTGGTGCCAGACCAGCTGACGACCCAGATCCAGCGTGGCAAGAGGCCTGTGCCGTCACCACAAGGAGCCAAGTAAAGAAAAAAGGCGAACATACCCCACTCAGAGTACCGAGTAATAAAGAAAACGCCGTGGTCGACAGGGACGTGTTGATTAAGATGCAACAAGAGGATCAAAGTCTGAAGAAATACTGGGACCGGAATGATGTGAAGATAAAAGGTGAAGGCGAAGTGTCATTTGTGGTTAAAGACGGGATCCTTTACCGTGCTTACCAGCACTCCCACGTAAACAGCGGCAAGTTGATTCGACAATATTTTGAACAAGAAGAAATTAATGATGCAGCAGTCGCCGTCAGTGGGAACATAGAAGCAGGTGCAGCACGTGAACCTACAGAACCCGAAACATACCACGACGGTGATGATGACCTTGTTGAGATAGGAGGCTATATTGCTAAAGAAACTCTGGCAGATGTTACTTTGGCACCTAGTCTTAACGAAGTCAAGCAGACAGAATTTATGGACCTGGCACAAGAGTACAGCGACCTTTTTACAGAAGCGCCGGGAACCACAAACCTTATACAACATCATATCAACCTCACGACAGACAAGCCTGTTAGCGCAAGGTTTACAAACGGACGTTTAATGCGGTGGGCTATGTTTCTCCAGAGTTACAACTTCAGGATCGAAGCGATCAAAGGTTCAGAGAACGTCGGAGCGGACTATTTAAGCCGTATTATGTAG

Transcript

c2166.g002.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023	SCAN	SCAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003309	Domain	SCAN domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan