Genomic Location: not available for this species
NR annotation: PHJ23294.1, adenylosuccinate synthetase [Cystoisospora suis]
Species Palythoa mizigama · all data for this species · gene families
c2575.g001.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8IDF6 | Adenylosuccinate synthetase OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=Adss PE=3 SV=1 |
| Q9U8D3 | Adenylosuccinate synthetase OS=Plasmodium falciparum OX=5833 GN=Adss PE=1 SV=3 |
| Q4X2S8 | Adenylosuccinate synthetase OS=Plasmodium chabaudi chabaudi OX=31271 GN=PC000072.01.0 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003484 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00709 all species → | Adenylsucc_synt | Adenylosuccinate synthetase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001114 all species → | Family | Adenylosuccinate synthetase | Interproscan |
| IPR042110 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 2 | Interproscan |
| IPR042111 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 3 | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR018220 all species → | Binding_site | Adenylosuccinate synthase, GTP-binding site | Interproscan |
| IPR042109 all species → | Homologous_superfamily | Adenylosuccinate synthetase, domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11846 all species → | ADENYLOSUCCINATE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004019 all species → | Molecular Function | adenylosuccinate synthase activity | Interproscan |
| GO:0006164 all species → | Biological Process | purine nucleotide biosynthetic process | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0044208 all species → | Biological Process | 'de novo' AMP biosynthetic process | Interproscan |
| GO:0046040 all species → | Biological Process | IMP metabolic process | Interproscan |
c2575.g001.t1.p1.Genes whose expression across the transcriptome samples of Palythoa mizigama tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Palythoa mizigama, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
