Gene detail

Detailed information of c2598.g001.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: CEM39324.1, unnamed protein product [Vitrella brassicaformis CCMP3155]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P0CS50	Protein transport protein SEC13 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SEC13 PE=3 SV=2
P0CS51	Protein transport protein SEC13 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SEC13 PE=3 SV=1
Q4PCB8	Protein transport protein SEC13 OS=Mycosarcoma maydis OX=5270 GN=SEC13 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR037363	Family	Sec13/Seh1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0030127	Cellular Component	COPII vesicle coat	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan
GO:0090114	Biological Process	COPII-coated vesicle budding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14004	SEC13; protein transport protein SEC13	-	Membrane trafficking	ko04131	deepkoala