Gene detail

Detailed information of c2684.g002.t2.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: CEM11363.1, unnamed protein product [Vitrella brassicaformis CCMP3155]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8W4M7	General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidopsis thaliana OX=3702 GN=XPD PE=1 SV=1
Q55G81	General transcription and DNA repair factor IIH helicase subunit XPD OS=Dictyostelium discoideum OX=44689 GN=repD PE=2 SV=1
P18074	General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sapiens OX=9606 GN=ERCC2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF06733	DEAD_2	DEAD_2	Family	Interproscan
PF06777	HBB	Helical and beta-bridge domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR010614	Domain	RAD3-like helicase, DEAD	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006554	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR010643	Domain	Helical and beta-bridge domain	Interproscan
IPR013020	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014013	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0045951	Biological Process	positive regulation of mitotic recombination	Interproscan