Genomic Location: not available for this species
NR annotation: MBA3530323.1, bifunctional oligoribonuclease/PAP phosphatase NrnA [Ardenticatenales bacterium]
Species Palythoa mizigama · all data for this species · gene families
c2701.g009.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P22746 | Bifunctional oligoribonuclease and PAP phosphatase NrnA OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) OX=243273 GN=nrnA PE=3 SV=4 |
| P75144 | Bifunctional oligoribonuclease and PAP phosphatase NrnA OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=nrnA PE=1 SV=1 |
| Q49428 | Uncharacterized protein MG371 OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) OX=243273 GN=MG371 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0065900 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02272 all species → | DHHA1 | DHHA1 domain | Family | Interproscan |
| PF01368 all species → | DHH | DHH family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051319 all species → | Family | Bifunctional oligoribonuclease/pAp-phosphatase and c-di-AMP PDE | Interproscan |
| IPR038763 all species → | Homologous_superfamily | DHH phosphoesterase superfamily | Interproscan |
| IPR003156 all species → | Domain | DHHA1 domain | Interproscan |
| IPR001667 all species → | Domain | DDH domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47618 all species → | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06881 | nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA | EC:3.1.3.7 EC:3.1.13.3 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Palythoa mizigama tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Palythoa mizigama, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
