Gene detail

Detailed information of c2845.g003.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: MBA3534907.1, CRISPR-associated helicase Cas3' [Ardenticatenales bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
O27158	CRISPR-associated nuclease/helicase Cas3 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=cas3 PE=1 SV=1
Q57821	Putative CRISPR-associated nuclease/helicase Cas3 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=cas3 PE=3 SV=2
P38036	CRISPR-associated endonuclease/helicase Cas3 OS=Escherichia coli (strain K12) OX=83333 GN=ygcB PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18019	Cas3_HD	Cas3, HD domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR006474	Domain	Helicase Cas3, CRISPR-associated, core	Interproscan
IPR006483	Domain	CRISPR-associated Cas3-type, HD domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR038257	Homologous_superfamily	CRISPR-associated Cas3-type HD domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07012	cas3; CRISPR-associated endonuclease/helicase Cas3	EC:3.1.-.- EC:5.6.2.4	Prokaryotic defense system	ko02048	deepkoala