Gene detail

Detailed information of c3273.g002.t1.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: CEL69370.1, TPA: Splicing factor U2af small subunit B [Neospora caninum Liverpool]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9FMY5	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1
Q9ZQW8	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1
Q9S709	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR009145	Family	U2 auxiliary factor small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12836	U2AF1; splicing factor U2AF 35 kDa subunit	-	Spliceosome	ko03041	deepkoala