Genomic Location: not available for this species
NR annotation: MBA3532308.1, HDIG domain-containing protein [Ardenticatenales bacterium]
Species Palythoa mizigama · all data for this species · gene families
c3383.g006.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0A0H3GGY3 | Cyclic-di-AMP phosphodiesterase PgpH OS=Listeria monocytogenes serotype 1/2a (strain 10403S) OX=393133 GN=pgpH PE=1 SV=1 |
| P46344 | Cyclic-di-AMP phosphodiesterase PgpH OS=Bacillus subtilis (strain 168) OX=224308 GN=pgpH PE=3 SV=2 |
| P54464 | Uncharacterized protein YqeY OS=Bacillus subtilis (strain 168) OX=224308 GN=yqeY PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0024601 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01966 all species → | HD | HD domain | Family | Interproscan |
| PF09424 all species → | YqeY | Yqey-like protein | Domain | Interproscan |
| PF07697 all species → | 7TMR-HDED | 7TM-HD extracellular | Domain | Interproscan |
| PF07698 all species → | 7TM-7TMR_HD | 7TM receptor with intracellular HD hydrolase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052722 all species → | Family | Cyclic-di-AMP phosphodiesterase PgpH | Interproscan |
| IPR023168 all species → | Homologous_superfamily | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 | Interproscan |
| IPR006674 all species → | Domain | HD domain | Interproscan |
| IPR042184 all species → | Homologous_superfamily | YqeY/Aim41, N-terminal domain | Interproscan |
| IPR006675 all species → | Domain | HDIG domain | Interproscan |
| IPR003607 all species → | Domain | HD/PDEase domain | Interproscan |
| IPR019004 all species → | Family | Uncharacterised protein YqeY/Aim41 | Interproscan |
| IPR011624 all species → | Domain | Metal-dependent phosphohydrolase, 7TM extracellular domain | Interproscan |
| IPR003789 all species → | Homologous_superfamily | Aspartyl/glutamyl-tRNA amidotransferase subunit B-like | Interproscan |
| IPR011621 all species → | Domain | Metal-dependent phosphohydrolase, 7TM intracellular domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR36442 all species → | CYCLIC-DI-AMP PHOSPHODIESTERASE PGPH | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016884 all species → | Molecular Function | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07037 | pgpH; cyclic-di-AMP phosphodiesterase PgpH | EC:3.1.4.- | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Palythoa mizigama tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Palythoa mizigama, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
