Gene detail

Detailed information of eanc_s001.g0131.t1 in Fimbriaphyllia ancora

Genomic Location: s001:1752555...1760711
NR annotation: XP_027055195.1, reticulon-3-A-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s001.g0131.t1

GAAAAATTGCGCCAGTGTGATTTTTGAAAACAAGGCCATCATTTCTAAATTGTCCTACTTTCCTCACGATTCTTGCGTTAGATTCAATCCTATAGTGAGTCTAACTCAACATAAACTTGTATTCCAGGTGGGGGATAAGCTAAGCTGTTTACTGGATATTTGTCTTCATTATGTCGGAGTCAAACTTTCCCGATACCGGCAATTTGCTGGACTTCGATTCAACTGAAAATGATGAAGATGTTTCTTCGACCACACCACCCATTGACGAACCTGTCAAAGACGAAGAAGAGCCTACCCCAGACAATGAAAATGTGTCGGATGAAAAGGAAGAAACGCCAGCTGTACAAGATCTTATGTCGGAGAAAACAGATTCAGACGAAAAACCAGAAGAAACGACCCCTGGGAAAGAGCTAACAAGCCGCCCAGCGAGATGGATGAAAGAGCATGGAGTCGATCAGAGAGTGATTGATCTGATCTACTGGCGGTGTCTGAAGAAGACTGGTGTTTTTGTGGCTACTGGCCTGGTGCTGCTGTTCTCACTGACCACGTACACGTTCTTGAGTGTAGTAACATTCTTTTCCATGGCGTTGTTAACAGTGTCTCTGCTCTACAGGGTTGGCACGACTGTAATGGGTGCAATCCAAAAGAGTGGCACTGAAAATCCATTTAAGACTATCCTTGAAAGAGAAGTTGACATTCCCAAAGAGAAGGCTGTTGAGATTGTGGAAGCTAGTGTTGATCACATCAACTGTCTTTCTAAGGAGTTGAGGCGCCTTTTCTTAGTGGAAGATATTGTTGATTCCATCAAGTTTGGTCTTCTGCTTTGGGTTTTGTCGTATGTTGGAGCTTGGTTCAATGCACTAACTCTTATTATCATTGATTTTATCCTGTTGTTTTCTCTCCCCCGTTTGTATGAGGAACATCAGGACAAGGTTGATGAATACCTCAGAATTGCTCGCAGTCAAATTTCGTCATTCATTGAACAGGCCAAGTCCAAGCTACCTGCCAAGTTGCAGAAACAAAAGTCATCATAATTATTCAGCTTGGGATCTCAGCACTATGAGAGCAGACCCCTTGAAGCGATGTCTGATTTTCAAGTGTACTTCAACTTCAAATCTCTTTTGTTTGGCCTGTGATTATTAATTTGTGCGCAGAAGGTACTTGATTCTCAGAGACTGTTGAAAAATTGTTTTCATATTAAGCTTTCTCTGTGGAAACTGGTCAGTGGTTTTGTTTGAAAAATGTTTTCAGGTGAAGGTATTGTAATTACTTGTAATTCCATATTGTTGGTAAGCAGGCTATGCACATTGGTAATATGAAAAAACATCTGTAATCCTGATTGTTTTTGGAATATTTAGTCATATGACCAAACCCAGAAGGAATACAGTAGTTTGCCATGATTAAATGGCATAGCACATTAGGCTAGAGTTTCTCAGAGTGGTTTCATTTTCTTGAGCCTTTCTTCGGCAGTCCTTCCTCTTTTTCAGCTGGTAGTGTGGATGTATTAATTTTAAAAGATGCAATATTTATTATTCAAAGCTGTCACACATACACTTATCCCCTAATAGAGTTCAATGAACCCATGACCATTTGCTTTCTGGTCAGAATGCTCTACCACAGAGTAACAGAAGACTTGGTGGAACATCAGAACTAGTAATGAGAGAGTTGCAGTTTCAGCACCTTTCGGGGAAGTGGGAGTTTTTTTTTCTGAGTATGCCAGTGCAGTGTTGAATAACTATTACAACCTTTATTCTGCTTACTGATATTGCTAGGTTGTATTTAAAACCCCTGGGGTCCTTACCCTTGTTACTTCTACAATACTATTAGTATATGCAAACAAGGCTTTAATCCTGTTAATTAAACAAACAGCTGCAAATGGGAAGCTGCTCTGCAGGCTAAGGTGGAAAGCAAAGCTTGTTTTTTGGTCCTTCGCACTCAGTCATGAGATCACCAGCATACGTATTCAGTTTTTGACGTTTGTTGTTTTAAACTTTGTCGCAGGGCTGGATGCTTTTGAAGGTTTATATGTACATGATAGTTTCAATGATAATATCCTCAATCTTCGTGAAATGTTACAGGAATTCAAGCTACTGTACATGGTTTTTAGCAGTTTTAAATGTGTCCGTTAATATGGAGCACGTGTATGTAGGCCCCCGCACTCCGTCAGGCCAAGTTTTCAATTGAAGTAGATTCAAAACAGCACATTGACAACTTTTGACAACTTTTTTTATAGATCTAGTGGTATAAAAAGTTACACTTAAAATTAATCGAAATGTTTTGGTTAGCGTTTATTTAATTCCGACGTGTTAGTGAAATCCCAAACGTGGATTGTGTGTCCACAATCCTCTCCTTCGGATCTACTTAGCAGTTGCGTTATGTGAACGTTGTACTTACCTTGTGTGCTGCAAATAAAAAAGATATTACACTGCATCGTTCTGTATTTCTCG

Transcript

eanc_s001.g0131.t1

Protein

Uniprot

Uniprot term	Description
Q9NQC3	Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4 PE=1 SV=2
Q6IFY7	Reticulon-1-A OS=Xenopus laevis OX=8355 GN=rtn1-a PE=2 SV=1
Q99P72	Reticulon-4 OS=Mus musculus OX=10090 GN=Rtn4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02453	Reticulon	Reticulon	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046964	Family	Reticulon 1-4	Interproscan
IPR003388	Domain	Reticulon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45799	RETICULON-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0030424	Cellular Component	axon	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20721	RTN1; reticulon-1	-	Chromosome and associated proteins	ko03036	deepkoala