Gene detail

Detailed information of eanc_s014.g0455.t1 in Fimbriaphyllia ancora

Genomic Location: s014:5677634...5695776
NR annotation: CAH3176564.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s014.g0455.t1

TGTAAAAGATGTCAACAGAAAAACACTCAGAAGGCCACTGAGAAATGTTACCCACGAAATTCGTCGTTCATCCGTCCGAGTCTCTAAAATGCCCCATTTGTAAAGAACTCTTCACAGATCCGGTAATTTCCACTCAGTGTGGGCATACGTTTTGCAGAAACTGCATTCGAAATGGTGTGTCAATAGCCGGAAATTCGGGGACCAAGTGTCCCCTGGACGGCACGATTTTGCAGCGCCTTCACCTAGTGTCTAATTTGGCCGTTAGAGGGCAGATTGAAGACTTGCTGATTTACTGCAGACATGGATTAACTAGATCGGATTCAGAAGAAGACTTTGAGATAGACAGTACTGGCTGTCAAGAGAAAATTTCGTTTGGTCGGCGAGCAGAGCACGAAGAAGCGTGTGGGTTCGCATTAGTACCCTGTCCTAATAGCTCAAATCAGTGCGGGAAATTTCGGAGGAGAGCTTTGGAGGAACACCTTAAAGTCTGTGCCCAGTACCGTTGCCAATATAGTGTGAAAGGCTGTGAATATGTTGGCACAAAGTTAGAAACAGAAGAACATACGAAAAATTGCAAACACAAGAACAGTGCAGATCCTCCTAAGTGTCAAGCTCTCCATTCTGGGTCTTCTGAGGAGTTAAGATCATCAGTGCAGATTCTCTCAGAGAGGGTTGCGTGGCTAGAAAACAATCAAGATGCTTTGGTGACACAAGTTGAACAGTGCAACAGTGCAATTTCTAGGTTATCTGAAACAGTTGAAGATCTGTCATTCCAAGTAGAGCAACTCACTGTGATTCTGAAGCGATCATCACTTTATCGGGAAATGTCAGTGACGTCCATCCCAGACACAATTAACAGTTCACAAAGCACCAGTCCTGATGAGACTGGTCTGTCATATTCATATGGACCAAAATCATTTGCCAGACTCAAGCCTGCTGCCATGGTGTCAACACATCATGATGCCTGGAGTATACCTTGTGTCTTTAAGTGCATTGGCACTCTAAGAGGTCACCGTGGAACCATCTGGTCCCTGGTCTCTAGAGGTCATCGTCTTTTCAGCGCTGGAGGAGATAGAGTCATCAAAGTCTGGAACATGGAGAATGTGCGGCTTGCAAAATGCACTGAAGTTCTTGAGGGTCACACTGGTGATATTCATGCCATGTGCGTTGGAGGCGGAAAACTATACAGTGCTGGGGCTGATCAGTCAATAATATCGTGGAACTTGGAAAACTTAACTCATAATAAGAGGATAGAGAATGCCCATGATGATATCATTTGTGCCATAGTTTACAACGGAAAGTACCTCTTCACATCCTCTCATTCTTGCATCAAGGTGTGGGACGCATCTTCTCTTCAAGAAATACACAAGATGCCGGATCTTCATCACTGGGTCAGAGCACTGGCTTTAGATGTGAAAAGAGAGAAACTTTTCAGTGGTTCGCACAATGTTGTCCATATATGGGACGCCACCGGTTCGTTTGGTCTCCGGGGAACAATTGATCATTCTCTTGGCTCCGTGTACTCGTTAGCTGCCACCAAACATTTTATTATCGTTGGCACGTATAACCAGAACATTCATGTGTATGACGTAAACACGTACCAGTCCATCAAGGCTCTTGTGGGTCACATTGGAACAGTCACGGGTTTGGCCCCAGCAGCCACAGGAAAATTGCTCTTTTCTGCTTCCTACGATACAACGGTGCAGGTGTGGAATCTGGATACCATGTTACCTATGCAGACTCTTTCAAGACACGAAGGAAGCGTCAACTGTTTGGTTATCCATAAAGATTTGTTACTGTCAGGCTCCGAAGACATGGAGATTAAGGTTTTCAAGTACTTCAAAGCGGAGTGAGATCAGCTTGTGTTCATGTTCTGCGGAATCCGTGTCGGTTTTGGATATCAACAGCGTGTGCTACAGGCTCTCCATTCAAGCATTCAGCTTACCAAGTCCTTGGAAACATGGTCGCCTGATGATGTAAAATAATGTTACCTTGCTTAATGTTACAAACAGAATTCTCTAAAAGGTTTAGTTTTGGCTTTGAATTGAGTAGGGCGAAACTGATCGACGCATTGGATTTCAGCTGTAAACCTTTAGCATTTGAGCCTCTCCTCTCTCAGCTTTATTTCATTTTTCCCCGGGTCAGCCGATGTTCAATTCCCCTTCCTCCATGCAGCATTTTGATCAAGATTGATGTTCTGTATCATCCTTTTTTAAAGATTTTTTAACTATATAGCGCCATCGGACAACTAGTGGATGGTGTGCACCACGGAGCATGAAGTGTTttatttgtgttattattattattattattTAAATGAATTCGTACCAAAGTGACACCTACACGGTTTGACCACGATTAATTTTTATTTTCCCTTTATCATTATTAGCTTTCCGCGTTGCGAGTTGTGTCAAAAGAAATTTATTTTCATCTTTTTTTTTTTAAATAAATAAATAAATATGACTGTAAGGT

Transcript

eanc_s014.g0455.t1

Protein

Uniprot

Gene family

Uniprot term	Description
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR039241	Family	Ribosomal RNA-processing protein Rrp9-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19865	U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala