Genomic Location: s032:2027543...2039231
NR annotation: XP_022807905.1, protein spinster homolog 1-like [Stylophora pistillata]
Species Fimbriaphyllia ancora · all data for this species · gene families
| CDS |
| eanc_s032.g0148.t1 |
| Transcript |
| eanc_s032.g0148.t1 |
| Protein |
| eanc_s032.g0148.t1 |
| UniProt accession | Description |
|---|---|
| A8WGF7 | Protein spinster homolog 1 OS=Xenopus tropicalis OX=8364 GN=spns1 PE=2 SV=2 |
| Q5XGK0 | Protein spinster homolog 1 OS=Xenopus laevis OX=8355 GN=spns1 PE=2 SV=1 |
| Q8R0G7 | Protein spinster homolog 1 OS=Mus musculus OX=10090 GN=Spns1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004320 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07690 all species → | MFS_1 | Major Facilitator Superfamily | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044770 all species → | Family | Protein spinster-like | Interproscan |
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR020846 all species → | Domain | Major facilitator superfamily domain | Interproscan |
| IPR011701 all species → | Family | Major facilitator superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23505 all species → | SPINSTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0005215 all species → | Molecular Function | transporter activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23677 | SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter | - | Transporters | ko02000 | deepkoala |
Transcript abundance of eanc_s032.g0148.t1 across 18 RNA-seq samples of Fimbriaphyllia ancora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| ovaries | 11 | 8 | 17.82 | 33.92 | |
| testes | 5 | 4 | 29.03 | 42.88 | |
| Tentacles | 1 | 1 | 74.62 | 74.62 | |
| Mouth and pharynx | 1 | 1 | 39.03 | 39.03 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| DRR235377 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 33.92 |
| DRR235381 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 32.01 |
| DRR235372 | ovaries | ovaries | oocytes with cytoplasmic polarization\, <125 um in diameter | not recorded | DRP006537 | 29.36 |
| DRR235379 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 27.82 |
| DRR235383 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 23.91 |
| DRR235378 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 19.82 |
| DRR235382 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 16.47 |
| DRR235376 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 12.71 |
| DRR235374 | ovaries | ovaries | oocytes with cytoplasmic polarization\, <125 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235375 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235380 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235387 | testes | testes | spermatogonia and primary spermatocytes | not recorded | DRP006537 | 42.88 |
| DRR235384 | testes | testes | spermatogonia | not recorded | DRP006537 | 36.85 |
| DRR235385 | testes | testes | spermatogonia | not recorded | DRP006537 | 34.73 |
| DRR235389 | testes | testes | spermatogonia and primary spermatocytes | not recorded | DRP006537 | 30.69 |
| DRR235386 | testes | testes | spermatogonia | not recorded | DRP006537 | 0.00 |
| DRR397929 | Tentacles | Tentacles | not recorded | not recorded | DRP011835 | 74.62 |
| DRR397944 | Mouth and pharynx | Mouth and pharynx | not recorded | not recorded | DRP011835 | 39.03 |
Source: CnidoSite RNA-seq expression matrices (FANCO_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Fimbriaphyllia ancora tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 18 | eanc_s022.g0273.t1 | 0.890492872249337 |
| Negatively correlated | 21 | eanc_s012.g0356.t1 | -0.843845829150995 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Fimbriaphyllia ancora, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
