Gene detail

Detailed information of eanc_s044.g0072.t1 in Fimbriaphyllia ancora

Genomic Location: s044:1274611...1286625
NR annotation: CAH3172078.1, unnamed protein product [Porites lobata]
Species Fimbriaphyllia ancora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

eanc_s044.g0072.t1

TTGAGTCAGTTCAGAGTCCACTCAGTACTCGTCAGAAAGCATCAAATTGGTGGACGAAGGTCAAGGTCATGTGCTCCAATCCTCGCTTGTTTTAAAAGTGATGATCATTGCCGGCATTATCATGTCAAGAGGGTGGCTCGCTGAATTTTGGGATGATCTGTGACGTTAGGTTCCTTTAATTTTTGTTTCACCGGGATCAGGGATGTCGCAAGTTTCTATGTATCTGTTCAAATGTGACGTCGGGTAATGACGTCGTTAATGATGGTTGACTGCCTTGAGAATATGCCAGTATAGCTAGCAGTCCTTTTTAGTGGTGTGGAATTAAAGCTTCGCTCACGTTGCGTAATCTTATTCTGTTTAAAAGAGAAAGGAACACGCAAATATCAGCAAACGTTTTAGAGGTTTCTGTCTTCTCGCACGAAGCTAATGACGTCATGAGTTTTCCCGGATGCTTGGTAACCAGGCTCATTCAATTGGACACGAGCGCAGTCGCACGTCTCGGCGACAATGGAAGAAGGATGTTACGAAAACCTATGACTTGATCGGGGGAAGTTCATTCGCATCTCCACTACCAAAATGTCTGCTCAAGTTAAAGAAGGAGTCAACCAAGGTTCTGGAGAACCTGCAAAACTTGGAGCTAAGAAACATAGATGGTACCTTGGAGGCATCGCCTCTGCCATGGCGGCCTGCTGCACGCACCCGTTGGATCTACTCAAGGTTCATTTGCAAACACAGCAGCAAGCTACCCATAACCTTACATCCATGGGAATTCATGTTGTACGGACTCAGGGTATTCTGGCTTTGTACAATGGACTCTCAGCTTCCCTAATGAGACAGCTTACCTACTCAACAACACGTTATGGATTGTATGAAGTGGTGTCAGCAGAACTAAAGAAAACAAATGATCCACTACCATTTTATCAGAAAATTGTCATAGGAGCTCTGGCTGGTTTTTTGGGTGGAATTGTTGGAAATCCTGCAGATATGGTAAATGTAAGGATGCAAAATGATGTTAAAACACTTGATCTGGCAAAGAGAAGGAATTACAAGCATGTTTTTGATGGTCTCTACCGAACAGCAGCAGAAGAGGGTGTGACAACTTGGATGAGGGGTGTGACTATGACCTCATCTAGGGCACTTCTCATGACAGTAGCTCAGGTGGCCTGCTATGACCAAGCCAAACAGTTGTTGCTGACAACAGGGTTTTTCAAAGATAATATTCTCACACACTTCACCGCAAGCTTTATAGCGGGTACAATTGCTACTGGCATTACACAGCCTGTTGATGTAATGAAAACAAGACTTATGGAGGCAAAACCAGGACAATACAAGAGTGTGGCCCATTGCATTCTCTACACAGCAAAACTTGGTCCAATTGGTTTTTATAAGGGCTTTGTCCCAGCTTGGGTCCGTTTAGCACCTCATACAATTCTGACATGGATTTTCTTGGAGCAGCTTAGAGTCTTCTTCCCCATAAAGCAACAATAGTGATTGAAGTAGTGAAGATTACAGAGAATGTGTTTGTCAATACAAAATTGTATTGGCAATTAATAATTTTTTTTATCATTTCAGGCCATTTAGAGTTAGAATCTAAGTTGTTCAAATATTAATTGTTATCAGTAGGTTTACCATTGTTTGAAGTGCCTGGGCTGAGTAGGGAATAAAACTGCTATTTTAGAAAAATCCATAAAAGGTTTTTTAAAGTAATATAACTGTCACATCTAATCGTTAGGTTAATAGGTTATCTATGTTTTGTTTATCTCAGCAAGTTCATGGATTTGTAAAACTGCATTACCTGTAAAGGTTTGGTAGTGCAGTTTTCACAATAGCAACTCTAAATTATTATTGTTCAATGTAAAAAAGTGGAAAAGTGGAAAAGTGGACTCTTTTAGAAGTTAGCATTGATAATTTACTGATTCTGTACATGTATATGTCGATCATACCATATGTAACAGCCTCTCTTAGTCAGTTGCTTGATGAAATACATCAAGACTTGTAGCTCAGTGGaaaaaaaaaaaaaaagaaagaaTACTGTTGACATGAGCTTCCCATGCTACCTAACCTCTTAGATCCATTTTGAAGCGTGACAGGCTGCGTTTCATTTTTTTAGACTTAAACATGAAGGGAATTTTTTTTAGCAGGAAAGTATATTAAGTAGAGAAAAATGTATTGTCCTTGTTGTTATCCAGTGTGTTACCTATGGTGGTTTGTATGTTATAACAACTCTGACAATTTCATGGTGTAGTCTCTCAAAGTGGCAAACAGATTAAATTATCAAGTGTTAAGTAAACCAGGTAGCATAGATTGTAGTTTGTACTCTGTAGTAATGGTCTGGTTTGGGGCTTCAGATCCTGAACCTAATTACCTCACTTTGAGTATACATTACATATGGCAGAATTTTAGTTAGCTCTGAATCACGGTTATTTGGCGAACATGGTAGCAACAAAAAGGACAGGTTTTGTTCGTAGTCAATGGAAATAAGCGAAAATAGTATGTGTTTTATATTGTTGACTAGTTTATCAAATAAGTTTATATCTTAGTGTTCAAGACAGCTTTTTGGCATCTGATGACATTGTGATGAAGAATAAAAAAATGGCTGTTGTTGGGGACTAACTAAAAACAAGATTATTGTAGATATTGTTTTGACTAGAACAAGTTATTTTCTGAAAAAAAAAAACCAATAGGTATAGGTATTGATATATATTAGAACTAATCTTCATAATATATTGCCATAAGTTTTGATTCTTTCTTTTGTTAATTTTTTACAGAGCTCTACGAAAAACAACCAAACGTATATATTAATTACCTTAAATAAAAGGTCGCGAATAAAATGTGAAAAGTGGA

Transcript

eanc_s044.g0072.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBX3	Mitochondrial dicarboxylate carrier OS=Homo sapiens OX=9606 GN=SLC25A10 PE=1 SV=2
O89035	Mitochondrial dicarboxylate carrier OS=Rattus norvegicus OX=10116 GN=Slc25a10 PE=2 SV=1
Q9QZD8	Mitochondrial dicarboxylate carrier OS=Mus musculus OX=10090 GN=Slc25a10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001412 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050391 all species →	Family	Mitochondrial Metabolite Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45618 all species →	MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008272 all species →	Biological Process	obsolete sulfate transport	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0015117 all species →	Molecular Function	thiosulfate transmembrane transporter activity	Interproscan
GO:0015131 all species →	Molecular Function	oxaloacetate transmembrane transporter activity	Interproscan
GO:0015140 all species →	Molecular Function	malate transmembrane transporter activity	Interproscan
GO:0015141 all species →	Molecular Function	succinate transmembrane transporter activity	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0015709 all species →	Biological Process	thiosulfate transport	Interproscan
GO:0015729 all species →	Biological Process	oxaloacetate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0035435 all species →	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:0071422 all species →	Biological Process	succinate transmembrane transport	Interproscan
GO:0071423 all species →	Biological Process	malate transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13577	SLC25A10, DIC; solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of eanc_s044.g0072.t1 across 18 RNA-seq samples of Fimbriaphyllia ancora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

4Conditions

322.0Max TPM

123.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
ovaries	11	9	93.15	236.17
testes	5	5	194.09	321.99
Tentacles	1	1	148.86	148.86
Mouth and pharynx	1	1	69.63	69.63

Per sample · hover a bar for the full sample record

Show the sample table (18 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
DRR235374	ovaries	ovaries	oocytes with cytoplasmic polarization\, <125 um in diameter	not recorded	DRP006537	236.17
DRR235382	ovaries	ovaries	oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD	not recorded	DRP006537	145.54
DRR235381	ovaries	ovaries	oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD	not recorded	DRP006537	142.66
DRR235372	ovaries	ovaries	oocytes with cytoplasmic polarization\, <125 um in diameter	not recorded	DRP006537	133.89
DRR235378	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 201-275 um in diameter	not recorded	DRP006537	87.80
DRR235377	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 126-200 um in diameter	not recorded	DRP006537	85.09
DRR235376	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 126-200 um in diameter	not recorded	DRP006537	80.70
DRR235383	ovaries	ovaries	oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD	not recorded	DRP006537	67.68
DRR235375	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 126-200 um in diameter	not recorded	DRP006537	45.06
DRR235379	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 201-275 um in diameter	not recorded	DRP006537	0.00
DRR235380	ovaries	ovaries	oocytes with accumulation of yolk and other components\, 201-275 um in diameter	not recorded	DRP006537	0.00
DRR235389	testes	testes	spermatogonia and primary spermatocytes	not recorded	DRP006537	321.99
DRR235385	testes	testes	spermatogonia	not recorded	DRP006537	309.67
DRR235386	testes	testes	spermatogonia	not recorded	DRP006537	151.16
DRR235387	testes	testes	spermatogonia and primary spermatocytes	not recorded	DRP006537	145.58
DRR235384	testes	testes	spermatogonia	not recorded	DRP006537	42.02
DRR397929	Tentacles	Tentacles	not recorded	not recorded	DRP011835	148.86
DRR397944	Mouth and pharynx	Mouth and pharynx	not recorded	not recorded	DRP011835	69.63

Source: CnidoSite RNA-seq expression matrices (FANCO_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Fimbriaphyllia ancora tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	6	eanc_s001.g0625.t1	0.903916818218626
Negatively correlated	18	eanc_s017.g0002.t1	-0.773555193440382

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Fimbriaphyllia ancora, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →