Genomic Location: s044:1613183...1628085
NR annotation: CAH3137263.1, unnamed protein product [Pocillopora meandrina]
Species Fimbriaphyllia ancora · all data for this species · gene families
| CDS |
| eanc_s044.g0099.t1 |
| Transcript |
| eanc_s044.g0099.t1 |
| Protein |
| eanc_s044.g0099.t1 |
| UniProt accession | Description |
|---|---|
| A4IHR1 | Intraflagellar transport protein 70A OS=Xenopus tropicalis OX=8364 GN=ift70a PE=2 SV=1 |
| Q6INU8 | Intraflagellar transport protein 70A OS=Xenopus laevis OX=8355 GN=ift70a PE=2 SV=1 |
| A7YE96 | Intraflagellar transport protein 70A OS=Danio rerio OX=7955 GN=ift70a PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004968 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13432 all species → | TPR_16 | Tetratricopeptide repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR039941 all species → | Family | Tetratricopeptide repeat protein 30 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20931 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005879 all species → | Cellular Component | axonemal microtubule | Interproscan |
| GO:0030992 all species → | Cellular Component | intraciliary transport particle B | Interproscan |
| GO:0042073 all species → | Biological Process | intraciliary transport | Interproscan |
| GO:0120170 all species → | Molecular Function | intraciliary transport particle B binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19683 | TTC30, DYF1; tetratricopeptide repeat protein 30 | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of eanc_s044.g0099.t1 across 18 RNA-seq samples of Fimbriaphyllia ancora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| ovaries | 11 | 8 | 39.93 | 164.99 | |
| testes | 5 | 4 | 49.59 | 84.97 | |
| Tentacles | 1 | 1 | 24.02 | 24.02 | |
| Mouth and pharynx | 1 | 1 | 70.55 | 70.55 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| DRR235380 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 164.99 |
| DRR235377 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 47.84 |
| DRR235378 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 47.19 |
| DRR235382 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 44.99 |
| DRR235383 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 42.32 |
| DRR235381 | ovaries | ovaries | oocytes with 'U'-like germinal vesicles\, >276 um in diameter and GVBD | not recorded | DRP006537 | 40.51 |
| DRR235376 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 34.46 |
| DRR235372 | ovaries | ovaries | oocytes with cytoplasmic polarization\, <125 um in diameter | not recorded | DRP006537 | 16.91 |
| DRR235374 | ovaries | ovaries | oocytes with cytoplasmic polarization\, <125 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235375 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 126-200 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235379 | ovaries | ovaries | oocytes with accumulation of yolk and other components\, 201-275 um in diameter | not recorded | DRP006537 | 0.00 |
| DRR235385 | testes | testes | spermatogonia | not recorded | DRP006537 | 84.97 |
| DRR235387 | testes | testes | spermatogonia and primary spermatocytes | not recorded | DRP006537 | 70.93 |
| DRR235389 | testes | testes | spermatogonia and primary spermatocytes | not recorded | DRP006537 | 52.69 |
| DRR235384 | testes | testes | spermatogonia | not recorded | DRP006537 | 39.34 |
| DRR235386 | testes | testes | spermatogonia | not recorded | DRP006537 | 0.00 |
| DRR397929 | Tentacles | Tentacles | not recorded | not recorded | DRP011835 | 24.02 |
| DRR397944 | Mouth and pharynx | Mouth and pharynx | not recorded | not recorded | DRP011835 | 70.55 |
Source: CnidoSite RNA-seq expression matrices (FANCO_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Fimbriaphyllia ancora tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 31 | eanc_s012.g0370.t1 | 0.93875121979369 |
| Negatively correlated | 8 | eanc_s088.g0091.t1 | -0.757318870671174 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Fimbriaphyllia ancora, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
