Gene detail

Detailed information of eanc_s044.g0123.t1 in Fimbriaphyllia ancora

Genomic Location: s044:1926268...1946420
NR annotation: KAJ7386250.1, Mitochondrial Rho GTPase 2 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s044.g0123.t1

CCCTCTACTGTAACCATGTTTCGTCCCCCACCTCCCCCGTCCATTCCCACATCTGCAACAGCAATTGTTCTACACAGTTGTTGTCGGTCACATTGCATGCGCACAATCATTCTTCACGGACGCGGCAAATATGGACGACAGGAGGCAAGGAGAAAATCCTCGGGAAATTTAAACTTATTATGTTTTAAGCACCAAGAGTACTTTTTGGGTAGTCTTTATTCTCTTTAAATTATACCAAGTCGCTTAACTAAAGCGAGTTGTAGTTGGTTAGCTAGTTCTGATTGTATCAAAATGAAAGACGTAAGAATATTGCTTGCAGGCGATCCACGAGTTGGGAAAACTTCGCTTATTTTATCCCTTGTCAGCGAGGAGTTTCCTGAGGAGGTTCCTGCTAAAGCAGAGGAAATAACAATTCCAGCTGATGTGACTCCAGAGAAAGTTCCTACACATATAGTGGATTATTCTGCCTTAGAACAGTCAGAAGATATGCTAGTGGAAGAGATTATTAAGGCAAATGTTGTTTGTGTGGTGTATGATGTTACAGTGGAAGAATCTCTGGAAAGAATACAGTCATATTGGTTACCACTCATACGACAAGCAAGTGAGGAGGACAGTGCTGCAAAACCTGTCATCATTGTTGGTAACAAATCAGACCTCACAGATGGAAGTACAATGGATACTGTTTTGCCGATAATGAATGACTACACAGAAGTGGAAACCTGTGTAGAGTGCTCTGCAAAGGAATTGAAAAATATTTCGGAGTTGTTTTATTACGCACAGAAAGCAGTTCTCCATCCAACAGCACCTCTGTTCTCTGCTGATAGTAAAGAGTTGAAGCCATTATGCCAGGCCGCTTTGTCAAGAATATTCAAGATATCAGACACTGATAATGACAGGCTGTTAAATGACAAAGAATTGAACGACTTTCAAAACCGGTGTTTTAACACACCCCTCCAAGGACCAGGACTTCAAGATGTCAAAAATGTAGTTAGGAAAAATGTACCAGATGGTCTAAGGGATGATGGACTTACCTTACAAGGTTTTTTGTTTCTGCATAAGCTGTTTATTCAGAGAGGACGGCATGAAACAACATGGACTGTTCTGAGAAAATTTGGATATGGTGATGATCTTAAGCTCAGGGAGGAATATTTATGTCCATCGATTGATATTGGAACAGACCAGACAGTTGAGCTATCAGATGCAGGATATCAGTTCCTTATTGACCTTTTCCACAGGCATGATAAGGATGAAGATGAAGCATTGAGGCCACAAGAACTGCAGGAATTGTTCAGCTTCTGTCCCACAATGCCATGGGGTGAAGATGTTCTTAGCTCCATAGAAACAAATGCCGTTGGTTGGATAACTCTTCAAGGTTTCCTGGCTCAGTGGACGTTGACAACATTTTTGGACTACACAAGGATGCTGGCATATTTAGCATATTTTGGTTACACTCACCAGGAGAATGAACCTTCCCTTTCAACTGCAATAACAGTAACCCGCAGTAAGGCTATCGACTTGCAGAAAAAACAGACTTCTCGTTCCGTGTTCCAGTGTTATGTTTTTGGCCCGCCTGGAGTAGGAAAGACCGCTTTTCTTCAAGCCTTTTTAGGACGCACTTTGGAGCCCGGTGAATCAGAGAAGAATCTGCCGAATTATACCATAAATCTACTTGAAGTGAACAGACAAGAAAAATACTTAGTGTTGCGTGAAATCCAGTGGGAAGATTCTGGCTTTCTGTTGCACGACAGACGGTGTGATGTGGCATGTTTTATTTATGACTCCACTGACGCTTCTTCATTTGACCAAGTGGTACAACTGCGAGAGAAACTTCCCAAAACGGTTCCATGTCTGTTAGTAGCGGGTAAGAATGAGGGTGTGCCAGCTAAGCAGGATTTTGAAATACAGCCGTCTCTTTACTGCACGTTGAACAAACTTCCCCCTCCACAGCCTTTCTCATCCCTCAGTAGACCAGATGTTTACAAACCTCTGTACGAGAACCTAGCTCAAATGGCTGTGTATCCACACCTGTGTGGTCCTAATGCTGAAGGTGTGACATCATACTGGATCGTTGCTGGCTTAGCTGCCGCTCTTATAGCAGCAACCGGTGTTTTGGTGTTTAGATACTTGAGGAAAGGAGGCTCAACCACGTGACATCCACAGGATACCAATACCCACTAGAATATTAATTACCGACCCTGTGCTTGACGATAGCATTTCAAACGAGGAAGAGCTGTCATGACGAAATATAATACTGTCACCTTTCACGGAACCAATAGGAGTGCAGACTTGTCTTCAACTGAGGACAGAAGGCTTTTACTTCAACATTGTTGCGGTAGTTTTTCGGTCAAATTTCTTGAACTAATACCTCAAGTTGAAGCAGAGAGAAGGACAATTGAAAACGACAGTGAGAACGTAATGGTCACATTGTATGATGCTTTTGTATTATTCTTGAATCTAACTATACCGAAGTGAAAAAAGCCAGTTTCCTTTTTAATGTAATCGCGGAAGTTTTTATTTTTCTTTTAGCTTGTTTGTGTTTGAATCGAGTAAAGGTCGATTATTAACATGAATACGCCTCAGTATTGCTTCGTTCCACATCATATTTGTTTCTTCTCTGAATTTTTCAGACGGTTCAAATATTCGTTCGAAATGTTTTAACCAACGAAGCGACAGTTTTATTTTATGAACCAATCAGTAGCGGAACTTGAGCGAGGTTTGACATCTCATTATCCTGTCGTGAGTCGAGCACTCAGTCTCGTTTTGAttccgtctaatcaaacgatcctggaatccttacttgttccagtcccatggtggttctgaaatggggaGCACGTATCATGCGAATTACCTTACGGTAACATTTATAGGGGGGCTTAACTTTAACCTTAGAATAGTATCTTATTATGTATTATAAATGTGCTATTTCATTATCGTCAACATCTTTTATGGCCGGGTGAAAAGAGAGTACTTGTGAGTATATGTAGAACAATCCTTATCCTATTTTATGAGAGTAAAGTCAGAGGAACTGTCACGCGCACTCGGATTTTTTTTGTTCGAGAGAGTGTGTGTGACAATATAGAATACAGTAATTACAGTTTTCAACCATTTTCCCACATTTTTCTGCTGATAACTGTCGCTGCTATACGATCCATATGGCGGGATAACGTTTAACGAATCTACTAAACCTAATTTCTGTAACCTTCATAAAATCATATGAGAGCGGGACAATTATTTCAAATTAGAGAAAAAAGCTGACGACGCAGCCAAACAAATTTCTTAATACCAGTTATACTGTTGCTAGTTTCTTCATTCTTGTCTACTTTTTAAACCGGCTGCCGCAATCACTTGTGTGCTAACCTGAACTGTAATGCACCAACGCAATCTTTTCTCGATTTCGTGAACACTTTGAAAGCACAAGATGTAGAGATGTTAAGTGTTCTTCGGACAGCAGAATGCTTGTTGGTAACGAAGTCTTGTCTCTGAGCACAAAAACACTCGGCAACGAAAGTCCGCTACCCTAACCAATCAAAGCACCATTAACACGCTTTAAATCAAATACTACTTCGATA

Transcript

eanc_s044.g0123.t1

Protein

Uniprot

Uniprot term	Description
Q6NVC5	Mitochondrial Rho GTPase 1-A OS=Danio rerio OX=7955 GN=rhot1a PE=2 SV=1
Q8BG51	Mitochondrial Rho GTPase 1 OS=Mus musculus OX=10090 GN=Rhot1 PE=1 SV=1
A1L1L6	Mitochondrial Rho GTPase OS=Rattus norvegicus OX=10116 GN=Rhot1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08355	EF_assoc_1	EF hand associated	Family	Interproscan
PF08356	EF_assoc_2	EF hand associated	Family	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013566	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR013567	Domain	EF hand associated, type-2	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR020860	Domain	MIRO domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR021181	Family	Mitochondrial Rho GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005741	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031307	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0047497	Biological Process	mitochondrion transport along microtubule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	GTP-binding proteins	ko04031	deepkoala