Gene detail

Detailed information of eanc_s050.g0019.t1 in Fimbriaphyllia ancora

Genomic Location: s050:410677...419975
NR annotation: XP_015777019.1, PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s050.g0019.t1

GTAGGATCTATTGAAAAGCCATGTCTACAGAACCAGAACAGCTCAGAAAAATCTTCGTCGGAGGTCTTAATCGCAAGACAACAGAAGAATCTCTGAAAGAGTATTTTTCGCTGTGGGGAAACATCGTGGACTGTGTGATTATGAGGGAAGGTAAGAACGGTCCTTCGCGTGGGTTCGGCTTTGTGACCTTCGACAGCGCTCAGGCTGTGGAAGATTGTTTGAAAGTGAAGAGGCATGAACTCGATAACTGGGAAATCGAACCCAAACGTTCGGTCCCGAAAGGCGAAGCCCAGTCAAGGACAAGGAAAATATTTGTTGGCGGACTTGCAAGCACTGCGACCGAGGCCGATGTAGAGGAGTACTTTACTAAACTTTGCGAGAAGTCTGGTACAGGAAAAGTTCTCGATGTGGATTTGAAGAGAGATAAAGAGAACCCCAACCGTCTCCGTGGTTTTGCGTTTGTTACGTTTGACTCGGACGATATTGTCGACAAAATTTGTTCAATCACTTTTCATCAGATCAAAATGAAACAATGCGAGGTGAAGAAAGCTGAATCACAAGCTGCTATGAGAAAGAAGGAGGAACAGGAAATGAAATCCAGTGGAAGATCCCGTGATCGTGATTCACACTCAGATTCGGACTCTCCAGGTTTTGGAGGTTTTCCTGCGAACTGGGGTCCAAATACAGGCTTTGGTGGAATGAATCAAGGAATTGGAGGATCAGGTGGAAGAGGCAACTTTGGTGgtggcagtggaatgggtggatttggaagtggaaATTTCAACAACCCTGCAGCTGCTGCAGCTCTTCTCAGCGGATTTAACCCTGCTGCCTTTGCTGGGTTTAATCCAATGGGAATGAGCCCTGGTTTTGGATTCAACAGTATGGGTTTTGGAGGGTTTGGTCCAGGTTTCTTTAGTGGGTTTGGTGGATTTGGACATGGTGGGTTTGGTTCTAGTGGAGGTGGGATTGGAGGAAGTGCTACTGGAGGAGGGAGTGGCTATGGTTCCGATGGCATGAGTGGTTATGGTGGAGGTGTACGGGGGCATGCTAGTTCTAGTAATTATGACAAAGATGGCTACAGTGATGCCCCTTATGGTATGGCTGAACTGAAAGGGTCATCTGCTAGTGATCGAAACCCATCAGCTGGATTGCCTGGTTCAAGTGCAATGACAGGGAATTCCAGTACTGGATATGATGGCATTAATAATCCAATGACTGCTGCTTATGGCCATGGGGCTTTACCGGGAGGTTTTGGTGGTTTCCCTAGTATGAGTGACTGGAGCCAATTTGCCAGTGCTACTGGCAGTGGAACAGGGGTTGGCAGAGGTTCAGATTATCAGATTGGAAACTATAACCAGATCAATTCCAATTATGGTCCAGCTGGTCGTTTAAATAGCCGTGGTGGTGGAGTTGGAGATAAAAGCAATCGAGGTTATAGACCCTATTGATGTCAGTAACTACTGTAAGGTATTGTAGCAATGAGTGCAGACAGTTCAGCAAACGAGTTAACCTCTTCACTGTGCAGTTGATTCAGAAAAATAGACAGACTTGATTCACAGCCTCAGCAGAAGAAAAAGAGAGAACAGATTACCTTAGACTACAGAAGCTAGAAAAGCTTATTCTCTTGATATGTAGAAATAGTAACTAGTCAATTTTTAGGCGTGAACAAATGGAGGTAGTTTAAAATTATGTTTTAGTGCCTTTGTCGTTTTCTGCAAAATGGTTCATTAAGATCAATTATTCCAAAATTACATGGAGGTTCAAGCTGAATTGTCTTCTTGGTGTTTCCCCCTTCTTGCTAACCCATTCCTGTAGGATTCCTTTCTCTACCCCTCCTTGGCTTAGTGCAATGATCCAGTTATAGGATTGCTGTCAAGTGTGAAAGCATTTGATCACAACCAATCTAGTACCCCTTGTCAATGCAGTACAGACATCCAAAATTAGGATTACTGTAAAGTGTGAACCATGTGTTGATCACAACCAATCTAGCACCCCCTTGTCAATACAGTACAGTCATCACTGTCAAGTGTGGATATATTTCCCACATTTATTTTCTACTGAATCATGATAAATTTTGCTATTGGTGCACGTCTTTACTAAGAAAGAAATTTGAGGTCAAAGTTAATTAAGTAGTCCAGTGCAAAAATAGAATAAAGGTGTTACAGTTGTGCTATTATAAGACAGGTTCATAGATTATTTGTTTATAGCACTACAAATCAGTCAAGTATATATGTAATAATTGGACCATGGCTCATGGGCAACGCTAGTTAAACGGCCTGTGTCGGTCAGTTAAATGAACTTTTTTTATCTGCAGGTTATATTACAATAATTTCTGATAACTTGAATTTTAATAAGTAATATTGAATTTCATAGTAGCACTGTAGGAAGGATTGGGCAGCACACTTGTGTTCATATGAGCATCTTTGCCAGCACAGTCCTGGTTCATCTCAATCTAATAAAATAAACACTGCTCA

Transcript

eanc_s050.g0019.t1

Protein

Uniprot

Uniprot term	Description
P51992	Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis OX=8355 PE=2 SV=1
P21522	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1
O43347	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala