Gene detail

Detailed information of eanc_s059.g0073.t1 in Fimbriaphyllia ancora

Genomic Location: s059:1182417...1186143
NR annotation: XP_020631355.1, uncharacterized protein LOC110068320 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s059.g0073.t1

GGTGGGCTCTGGGGAAGAGAATGTCCAAGCCTATTGGccgagaggtccttgatgccacttccgctgttatttccaagaattgcagtgtcttgttgccctaaacggatgccatgactcgctgtaagagttttttcgacgatgttaagaaggaactggaatgttctgtttgccaagagcagttcagtgaaattaatgaacccaagatactgaaatgccttcacactttctgcaagacctgtctggaagcttggataagacagcatcgtgaaggagagttaagttgcccgacgtgtcgccacatcaccgaatgtcccaacagcgacataaaccggctgccatctaacctgttttacaaacagatgttggaaattgtggaggcttacagcggacaaggacaggaagactcgccacgctgtggaaattgtgACGAAAGAAAATCTTTGAAGATTTATTGTTCCGACTGCAACTGCTTCTTGTGTGATGATTGTGTCCGTTTccataagaaaggaaagatttttaatggccacaacgttaaagaaatttcaaactttaaatcaagcgatgtgcaagactatgctcggaaggcaagcatttgtaagaaacatgacgatgaactgaggtattactgcgacaaatgtaaaatttgcatctgtcgcgactgcgccatattggaacatcgcgaccacagcataatctccttcgagcaagggcttgacagcaaaaaatcagaaatcaccaatagaatgctagacgttgaggcagttggtatttttttaaggcaacaaaaggaaaccttgaagaaaagaggaacacgggtaaataacagcatcgaccgagcgacttatgaagtgcatcgttttgccgaacactgcataagtttaatccgtaaacacgaagcaactataacaaaagagttactcaaccataaggcaagtttttcaagtgagttctcatctcaaatgaccgctttagaagagaaaatgaaggatgtaaacagtagtctggaatttggcaaagacgttttagaacgcaacaacctacttgagattttgaacgtggaagaaacactcgaacgaaggtttcaagattttttatcatcgccggaatttagttgttccatccagatgaatggctgtggggtgaaatacaagccaagagatatgtcgaacatagaaaacgagttgggagagttatttttctctaataccgagccttcgctgtcgatcgcacaaggcaagggattgacggagggtttacaaggcgaagattgcaccttcacgattgtcacgaaagactggcaaggaaaaacagcttacccattcagtgaaattgatcaaatcactgttgacattcaatcCTCACAGTCTGCGAGAATCCAGCGACTCAGCATAACAGACTTAACAGAGGGCAGCTATGAAGTGAAGTACACACCAGAAGATGCAGGACAATTCAATGTCTCTATAAGAATAGCGGGCGAAGCTATCATGGGCAGTCCATTTCAATTGAAAGTCAAAGAAAGCATGTCAAGAAAAAAGGGCAAGAAAACCGGAAAACGCAAATCACCACTATCCATCCTCTTCCCTGAGGTTGAGAAGGACGAGTTCTTGGTCACAAGGAAGGAGGAAGACCTCGACGTAGTCCTGACCATTATTGTCAGTGGTGATTTACCTACAGAAGATGCTATTTTGAATTATTTCGAGAACGAGAGGAGATCTGGGGGAGGCGAAATTCTCAAAATGGTTTATAATTTCGATGGAAATGCTGTGATTTCATTTCATGAGGTTGCAGATTTAAATCGGCTTCTTGAAGGTCAACATACCATTGCTGGGAAAAGTATTGCAGTGACGAAGCAAACACCCAAGAAGAAAGTCCCACTTGATCCACTGAAGATCCATGTTCAAGGACTCAACGAGACAACTTCCGTGAAGACTGCTTGCGCTTCTATTTGGAGAATTTCACAAACGTAGACGTCGCTGAGGTGTTCAAAGGCTACAACAACAACGCGTTAGCAATTTTTGATGATGAACCAGATGATTATCAAATGTTATCCATGTGCATTTATAGACAGGACTAGTCATAACAACAATACCCAAATTATCAATAACAAGGTTGTCGTAAGATTGTGTTTACGCATGAt

Transcript

eanc_s059.g0073.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q99PP7	E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus OX=10090 GN=Trim33 PE=1 SV=2
Q9UPN9	E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens OX=9606 GN=TRIM33 PE=1 SV=3
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan