Gene detail

Detailed information of eanc_s133.g0017.t1 in Fimbriaphyllia ancora

Genomic Location: s133:245265...253875
NR annotation: XP_044172456.1, heterogeneous nuclear ribonucleoprotein A3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

eanc_s133.g0017.t1

ATCTTTTGATCAAAAAGGGATTTGGCAGAAGTATGTTGCTTTTTAAGACTTCCAAGAAAGGGGCCCCAAAGAAAGCACCATTAATTTGGAAAAGTTATAGGATGGGATGTTATACATGAAATGACTCATAAACTCTTGGGTTTCTTTTACCCCCTCATTGTTCCCCTTTATGTCAAGCTAGCAGTGCAAGATAAATCCATTTTATTCATGTTTCCCAGGCTTCCTCTCCTTTTTATGTGGGAGCCCTATTGTGAAAACGTTCTGTCCATTTTCAGAAGCAGTCTGTAAGGAGGATGATTTGGCAAACAAAGAGCACCACTCTGTGGATTTGGGCCCGTCAGTTGTAGAAAAATGTTGATGCATCACAATGCTGTAAATTCTATTGCAGGTCACGCATTGAAGAATGGGTCTCCCATGAAATGGTTTGGTGTTCTCTTCTTCTTTGTACTGACAGTGTTTGCATTAATAAAGGGTTTTGTTGCTCGTTTTCTCGACAGCGTGGCAATTGGAAGGATTTGTGCGCTCGTGGAAACTCAAGGTTTTGCTCTTCGAGATTTGTTCTAACATGGCTATGGAAGGGTGGGAAGACAATCCTGATCTCAAGAAGCTGTATGTTGCTAAGCTGAAGCAGGAAACAACAGAAGACACTGTGATAAACTACTTTGGCAAACTTGGAACTGTCAGCGACATCAAGATCATCAAAGACCAAGACGGTAATTCGAGAGGGTTTGGATTTGTTACTATGTCAGATCAAGCAGTTGTTGACAACATCTTGGAGACTAGGCCCCATACCATTGATGGGCAGACTGCATTCCTGAGGCGTGCAATTCCCAAAGATGATCCAAATCCTCTTGCCCAAGCCAAAACAAAGAAGCTGTTTATTGGAGGTCTGAATGAAGAAGCCACAGAAGAGGACATCAAGAATGTGCTGGCCATCTTCACACAGCATCCGCCCGAACAAATCAAACTTATGCGGGATAGAAACACCAACAAGTTCAAGGGCTATGCCTTTGCCATATTCCACAGTGAAGACATCGTGGACAAGCTGTTCATTATTAGGAATGCCACAATCAAAAACAAGAAAGTGGAGATGAAGAAAGCAGAAGAGATCGGCGGACCCggcggtggtggaggtgctagagggcgaggaagaggaggaggaTTCAGGGGTGGGAGAGGTGCAGGTCCCCCTAGAAgtggtgctggtgctggtgctggtggCAGCAGTGGATATACTCCATCGGCCTACAGTGCTTATAGTGGTTATAGTGCTTATGGTGATGGTAGTTATGGTGCAGATGATTACAGCTATGGAGGTTATCCTCAGTATGGGAATGGTTATGATAACTATAGTGGAGGGTATAGTGCGGGGTATGGTGGTGGCTACAGTAGTGGCTACAATAGTGGCGAGTATGGCTCAGAGCCCTCAAGTTATGGGCCAAACAGGCgtggtggtggcggtcgcggacgtggtggtggcggtggtggaggGTATCGTCCTTACTGAGTGAAGCAAAAGCACAAGGACTTGTCTATTTTGAATTTTGTTACCGACTTGTCACATAGTTGTCTATTGAGTGCTGGTGATGATCACCTTCAAGCCTGCAAGTCTCATGAAATGACCCTTCTCATCAACCTTGTAAATTGGAGTGAACTGAATAATTGTTTTGCAAGTTTGCTTGAACCTTAATGAGAACACTTAATCTTGATTAATTGCCATCAAAATGCATCAGTTTGAACATTTTTATTTTACTCTTGTTTACTTGATGGATACCTTTATTTGTAAACTGTTTAGCTTTCATCGATGTGTTTGTTTGCAGTCAATCGAAAGTTTTTTGTAACTAGAGTTAAAAAGGAAAGTGATCACAGGCAGTTTAACTAATATTTTATTTGGGGGGGAGGGGGTGGAAACTGTTATGTAAAGGAAATGTTCTGTTGCATTTCTGTTGTGCTATTCTTTGCCGCATGTAGACTTTGTGTAGAGGCAGTGCATTCCTCTTTAAGTAGTTAACTGAAAGAAGGTAAATGCTTTAAAGTTGTATTTAAGATGTTTTTAACCTTTGTATCCAATAAAGTAACTGAGTTTTT

Transcript

eanc_s133.g0017.t1

Protein

Uniprot

Uniprot term	Description
Q9VVE5	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3
Q99383	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRP1 PE=1 SV=1
Q99020	Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus OX=10090 GN=Hnrnpab PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala