Detailed information of evm.model.Ap1.175 in Astrangia poculata

Genomic Location: Ap1:1576227...1586746
NR annotation: CAH3143428.1, unnamed protein product [Porites evermanni]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RE18Survival motor neuron protein OS=Pongo abelii OX=9601 GN=SMN1 PE=2 SV=1
Q4R4F8Survival motor neuron protein OS=Macaca fascicularis OX=9541 GN=SMN1 PE=2 SV=1
O18870Survival motor neuron protein OS=Bos taurus OX=9913 GN=SMN1 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20636SMN_G2-BDSurvival Motor Neuron, Gemin2-binding domainDomainInterproscan
PF06003SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF20635SMN_YG-boxSurvival Motor Neuron, YG-boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040424FamilySMN complex subunit Smn1Interproscan
IPR010304DomainSurvival motor neuron, Tudor domainInterproscan
IPR047313DomainSurvival motor neuron protein, C-terminal oligomerization domainInterproscan
IPR002999DomainTudor domainInterproscan
IPR047298DomainSurvival motor neuron protein, Tudor domain, eumetazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR39267SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13129SMN; survival motor neuron protein-Spliceosomeko03041deepkoala

TOP