Detailed information of evm.model.Ap1.191 in Astrangia poculata

Genomic Location: Ap1:1728975...1743336
NR annotation: KAJ7385397.1, hypothetical protein OS493_016479 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P35445Cartilage oligomeric matrix protein OS=Bos taurus OX=9913 GN=COMP PE=1 SV=2
Q8JGW0Thrombospondin-4-B OS=Danio rerio OX=7955 GN=thbs4b PE=2 SV=1
P35444Cartilage oligomeric matrix protein OS=Rattus norvegicus OX=10116 GN=Comp PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF12947EGF_3EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR024731DomainEGF domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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