Detailed information of evm.model.Ap1.3983 in Astrangia poculata

Genomic Location: Ap1:40761062...40766548
NR annotation: XP_020604986.1, rab5 GDP/GTP exchange factor-like isoform X1 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9UJ41Rab5 GDP/GTP exchange factor OS=Homo sapiens OX=9606 GN=RABGEF1 PE=1 SV=3
O18973Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF1 PE=1 SV=1
Q9JM13Rab5 GDP/GTP exchange factor OS=Mus musculus OX=10090 GN=Rabgef1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|ZnF_A20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01754zf-A20A20-like zinc fingerFamilyInterproscan
PF18151DUF5601Domain of unknown function (DUF5601)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002653DomainZinc finger, A20-typeInterproscan
IPR045046FamilyVacuolar protein sorting-associated protein 9-likeInterproscan
IPR041545DomainRABX5, catalytic core helical domainInterproscan
IPR037191Homologous_superfamilyVPS9 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23101RAB GDP/GTP EXCHANGE FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030139Cellular Componentendocytic vesicleInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan

TOP