Gene detail

Detailed information of evm.model.Ap1.4193 in Astrangia poculata

Genomic Location: Ap1:42840701...42842845
NR annotation: XP_015758349.1, PREDICTED: uncharacterized protein LOC107337653 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap1.4193

atggcggcggtcggttgtgtcaaaatatgctctttaattttactcgtctttctactccaattgtacatcctgagcaatgaagtccgtctacaatcacaggataaaccttgctcctacgcccttcgaagccgttgcgccaaatcttcgccgcaatcagcgagcttctcacgctcgaggaagagaagttactttagttctcgggcgcgatattactcaaatggcgtcgcaggttttcatctggaaaatttattgctttctggagatattagccccaatcctggaccgagtgctagttgcaaaagagccacagtgaagtgccactcgtgttccagatcaatagctgtaaaccaccgcgccattccatgcagtaagtgttctcagagattacacatcaaatgtgcgggattgtcagcgaaggactttctaaagtggaaacatagtgtcactgcgagcaacaacacgtgggtctgtccgaaatgtttgtggagtgagcttccactggatgtaagttttaattctacggtttctgggcctgaagattcatctatctcactggataccgatactgccgatgatattatggaaattctgaaaccatttaccaacaacctggtcattggaaacctgaatgtaaacagtctggccggaaaattcagcgagatcctcgaatgggtcgaggcttttgacatcctatgtattcaggaaacaaagatagaccggtcattccctgactctcaatttgccataaaaggttacgatgtctaccgcagggacagaaagaaaggcggtggaggcattatattgtatatccgaaagtgtttaccgtcttaccgaatacgaatgaaatgccaagaagtagagggtattcttgtggatatccaggcgggtaaacgacatatttcgctactatgtgcctataaaccaccgtcagtatgcaatgttaatttcacaaacgaaatgcatgcgtttctagatgtagcgatgtcgaaccaaacaaacgtgttttgtttgggcgatttgaactgtgacattcttcacccttcagacaatggaaaagagggacgagcttggctagacatatgcgatgtttacgatttggagaatttgattaaggaaaggaccagaatttctcgtaccaaggagtcatgtttagatgttattgcaacgaatgctccagcatttgcattacatgcgggcacactggagttaggcctgagcgatcacaaattggtctacgcagtgcttaataagaaggtgatgaagccgaaggtagctttcacaaagagcaggtgtttcaagaacttcgacgaggaggcttttaacaatgacctagagcgcgtgccgtttgacgttgcatacctttttgacgacgtgagtgatatttgctgggcttttgagaaaatgtatacaaacgtgttggatgaccacgcacctcttaggaagacaaagttgagaggtgcctctgaacaatcaaagttcattacaccagaaataagatcagctatgcgtaaaagaaatgctcttaaacgcaaatactacaaaacaagggcagccgttgactgggacgcgtacaggtgtcttaggaaccgcgtggttgccatgcgtcgtaaatccatcatcgaacacttcaaacgcctgtgtaacctgagcgcgggaaacccgagggatttctggagttcattgcggccttttatgaattcgaggcatcgctcgccaaatgagctaattactctcaaagaagaacaaggagttatcaaagatcaaaatcaggtggcacaaacatttaatgcatatttcagtaatatcacaggggacttgatcgaaaacaagcataccgctttcaaagaacaatcgcacgtatgcagattcccatcgagcaagaatggtaagacaacaagcacgttctcattcaagccgacgaattaccacacagtgaaagcagtgttggagaatattaagccgaacaaagctcaaggatacgacctgattcctccgagagcggttaaggcatcttctaggtccattgcaatgcccttctgcaaactaattaatactatcattagtaggtcgcaagtacctgacacctggaagcacggtcaaatcacgccactccacaagaaagacagcgtcttggataaaaaataa

Transcript

evm.model.Ap1.4193

ATGGCGGCGGTCGGTTGTGTCAAAATATGCTCTTTAATTTTACTCGTCTTTCTACTCCAATTGTACATCCTGAGCAATGAAGTCCGTCTACAATCACAGGATAAACCTTGCTCCTACGCCCTTCGAAGCCGTTGCGCCAAATCTTCGCCGCAATCAGCGAGCTTCTCACGCTCGAGGAAGAGAAGTTACTTTAGTTCTCGGGCGCGATATTACTCAAATGGCGTCGCAGGTTTTCATCTGGAAAATTTATTGCTTTCTGGAGATATTAGCCCCAATCCTGGACCGAGTGCTAGTTGCAAAAGAGCCACAGTGAAGTGCCACTCGTGTTCCAGATCAATAGCTGTAAACCACCGCGCCATTCCATGCAGTAAGTGTTCTCAGAGATTACACATCAAATGTGCGGGATTGTCAGCGAAGGACTTTCTAAAGTGGAAACATAGTGTCACTGCGAGCAACAACACGTGGGTCTGTCCGAAATGTTTGTGGAGTGAGCTTCCACTGGATGTAAGTTTTAATTCTACGGTTTCTGGGCCTGAAGATTCATCTATCTCACTGGATACCGATACTGCCGATGATATTATGGAAATTCTGAAACCATTTACCAACAACCTGGTCATTGGAAACCTGAATGTAAACAGTCTGGCCGGAAAATTCAGCGAGATCCTCGAATGGGTCGAGGCTTTTGACATCCTATGTATTCAGGAAACAAAGATAGACCGGTCATTCCCTGACTCTCAATTTGCCATAAAAGGTTACGATGTCTACCGCAGGGACAGAAAGAAAGGCGGTGGAGGCATTATATTGTATATCCGAAAGTGTTTACCGTCTTACCGAATACGAATGAAATGCCAAGAAGTAGAGGGTATTCTTGTGGATATCCAGGCGGGTAAACGACATATTTCGCTACTATGTGCCTATAAACCACCGTCAGTATGCAATGTTAATTTCACAAACGAAATGCATGCGTTTCTAGATGTAGCGATGTCGAACCAAACAAACGTGTTTTGTTTGGGCGATTTGAACTGTGACATTCTTCACCCTTCAGACAATGGAAAAGAGGGACGAGCTTGGCTAGACATATGCGATGTTTACGATTTGGAGAATTTGATTAAGGAAAGGACCAGAATTTCTCGTACCAAGGAGTCATGTTTAGATGTTATTGCAACGAATGCTCCAGCATTTGCATTACATGCGGGCACACTGGAGTTAGGCCTGAGCGATCACAAATTGGTCTACGCAGTGCTTAATAAGAAGGTGATGAAGCCGAAGGTAGCTTTCACAAAGAGCAGGTGTTTCAAGAACTTCGACGAGGAGGCTTTTAACAATGACCTAGAGCGCGTGCCGTTTGACGTTGCATACCTTTTTGACGACGTGAGTGATATTTGCTGGGCTTTTGAGAAAATGTATACAAACGTGTTGGATGACCACGCACCTCTTAGGAAGACAAAGTTGAGAGGTGCCTCTGAACAATCAAAGTTCATTACACCAGAAATAAGATCAGCTATGCGTAAAAGAAATGCTCTTAAACGCAAATACTACAAAACAAGGGCAGCCGTTGACTGGGACGCGTACAGGTGTCTTAGGAACCGCGTGGTTGCCATGCGTCGTAAATCCATCATCGAACACTTCAAACGCCTGTGTAACCTGAGCGCGGGAAACCCGAGGGATTTCTGGAGTTCATTGCGGCCTTTTATGAATTCGAGGCATCGCTCGCCAAATGAGCTAATTACTCTCAAAGAAGAACAAGGAGTTATCAAAGATCAAAATCAGGTGGCACAAACATTTAATGCATATTTCAGTAATATCACAGGGGACTTGATCGAAAACAAGCATACCGCTTTCAAAGAACAATCGCACGTATGCAGATTCCCATCGAGCAAGAATGGTAAGACAACAAGCACGTTCTCATTCAAGCCGACGAATTACCACACAGTGAAAGCAGTGTTGGAGAATATTAAGCCGAACAAAGCTCAAGGATACGACCTGATTCCTCCGAGAGCGGTTAAGGCATCTTCTAGGTCCATTGCAATGCCCTTCTGCAAACTAATTAATACTATCATTAGTAGGTCGCAAGTACCTGACACCTGGAAGCACGGTCAAATCACGCCACTCCACAAGAAAGACAGCGTCTTGGATAAAAAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR020847	Binding_site	AP endonuclease 1, binding site	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan