Gene detail

Detailed information of evm.model.Ap10.1225 in Astrangia poculata

Genomic Location: Ap10:12732275...12735187
NR annotation: XP_044163516.1, uncharacterized protein K02A2.6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap10.1225

atgggagacccagctccaggcgaagccggaattccagctgaacaacagcaattagtagttgacgagccgaatgaagccggcgctccgccacaacagactgcacaaccacaagcaccggtacaacaacaaatggttcaacaaatctccgtggcaaattaccaagttccaccaccggaaaaattcaactttaagcccgaagaatggccacgctggatcaagcgttttgagagatttcgaaaagcgaccggactcgaccaaaaggacggcgatagccaagtaaacactttgatttattcgatgggcgaagaagctgacgacatcatggtcgcattcggactatcaaacgaagaagcgaagcagtatcacgtcgtgaaaggcaagtttgaagctcatttcgtggtaaagagaaatgtaatatttgagcgagcgaaatttaaccagagaagccaacaggatggtgagtcagtggataatttcataacagatttatattgccttgctgaatactgcgaatttggaacattgagagacgatctcatcagagatagaatcgttgtagggataaaagacaagaagctctctgaacaactgcaactggattctaagttgactttggagaaagcaatcacaaaagccagacagtcagagacagttaagaagcaacaacctttcctacaggaagccaagtctgagcctcctgtaccagccagtgtggaccacttatccaaaggaaaaggaaaagattctaaagaagacataaagaagaaaaagaaaccacccaagccacccaagtttaaaaatgggaagactcctgaagcacagtgttcaaggtgcctgggtcaatcacacccaaagagacaatttccagccagagaatcaaaatgtatgaagtgttctaaagtaggacattgggcaaaggcttgtaagtccctaccagacaagagagtggctgaagtgaatttcactgggagacaagatgaaggagagttattcctgggtgaactcactgaactatctgctgtccaaggaggggcaggagattcatggaaagcactcgtctcgatgaatggacaactgatggagttcaaagtagattctggtgcagatgtaacagttattccgccaagcttatttcatagcctgaaaccaactccatcacttagcaagacaaccagggtactcatgggtccatgtaaacagaaactgagctgcctaggaactttcacagctaagttgcgagttcaagacaaggttactcaggaacaagtgtatgtgatagaagatttggagcgacctttgctaggaagagagccagctgaacatctaaagctaattagcagacttgacagcctaagcagtgtggactacaagagtaaagtagcagacaaataccccaagttgttcaagggactgggtgttatgaaggacagttactgcatcacactccaagaagatgccaaaccttttcaagtaacagtaccaaggaaagtgcccttccctctgtatcagaaaactaaggaagagttagacagaatgttggagacaggtgtcatatccagagttgaccagcccactgattggtgtgctcctatggttgttactcctaagagcaatgggaacgaatgggtatggggaagtgagcaacagaaagcatttgagcagatcaaagctgacctcacacaagtcccagtactggcactgtacgatccaaacaaggaaaccaaagtggcagctgatgcttcctcctatggcctaggcggggtagttcttcaactccaaccagacaactcctggcgaccagtttcattcatatcaagagcgatgactcccaccgagaccagatatgcacagatagaaaaagaagccctagcactcacctgggcatgcgaacgatcctgggagtacatcgtggggaagtcgatctccgttgaaactgaccacaaacccctggtgccacttctgagtacgcacactctataccaacttccgccgcgaatccagagattcagaatgcgactaatgagattccacttcaaggagatcaagcatgttcctggaaagaagatgtacatacccgatgcgctttcaagactccaagtccgaagccaagcagttcagtctacaattgatgatgacgaaatgcacgcacacattggaagcgtgatctcatcactgcctgcctcagacttcagcagatcatggaagcacaggaagaggatccagtctgcagacagatcaaagtgtactgctatgaaggatggcctgacaagcattccttaa

Transcript

evm.model.Ap10.1225

ATGGGAGACCCAGCTCCAGGCGAAGCCGGAATTCCAGCTGAACAACAGCAATTAGTAGTTGACGAGCCGAATGAAGCCGGCGCTCCGCCACAACAGACTGCACAACCACAAGCACCGGTACAACAACAAATGGTTCAACAAATCTCCGTGGCAAATTACCAAGTTCCACCACCGGAAAAATTCAACTTTAAGCCCGAAGAATGGCCACGCTGGATCAAGCGTTTTGAGAGATTTCGAAAAGCGACCGGACTCGACCAAAAGGACGGCGATAGCCAAGTAAACACTTTGATTTATTCGATGGGCGAAGAAGCTGACGACATCATGGTCGCATTCGGACTATCAAACGAAGAAGCGAAGCAGTATCACGTCGTGAAAGGCAAGTTTGAAGCTCATTTCGTGGTAAAGAGAAATGTAATATTTGAGCGAGCGAAATTTAACCAGAGAAGCCAACAGGATGGTGAGTCAGTGGATAATTTCATAACAGATTTATATTGCCTTGCTGAATACTGCGAATTTGGAACATTGAGAGACGATCTCATCAGAGATAGAATCGTTGTAGGGATAAAAGACAAGAAGCTCTCTGAACAACTGCAACTGGATTCTAAGTTGACTTTGGAGAAAGCAATCACAAAAGCCAGACAGTCAGAGACAGTTAAGAAGCAACAACCTTTCCTACAGGAAGCCAAGTCTGAGCCTCCTGTACCAGCCAGTGTGGACCACTTATCCAAAGGAAAAGGAAAAGATTCTAAAGAAGACATAAAGAAGAAAAAGAAACCACCCAAGCCACCCAAGTTTAAAAATGGGAAGACTCCTGAAGCACAGTGTTCAAGGTGCCTGGGTCAATCACACCCAAAGAGACAATTTCCAGCCAGAGAATCAAAATGTATGAAGTGTTCTAAAGTAGGACATTGGGCAAAGGCTTGTAAGTCCCTACCAGACAAGAGAGTGGCTGAAGTGAATTTCACTGGGAGACAAGATGAAGGAGAGTTATTCCTGGGTGAACTCACTGAACTATCTGCTGTCCAAGGAGGGGCAGGAGATTCATGGAAAGCACTCGTCTCGATGAATGGACAACTGATGGAGTTCAAAGTAGATTCTGGTGCAGATGTAACAGTTATTCCGCCAAGCTTATTTCATAGCCTGAAACCAACTCCATCACTTAGCAAGACAACCAGGGTACTCATGGGTCCATGTAAACAGAAACTGAGCTGCCTAGGAACTTTCACAGCTAAGTTGCGAGTTCAAGACAAGGTTACTCAGGAACAAGTGTATGTGATAGAAGATTTGGAGCGACCTTTGCTAGGAAGAGAGCCAGCTGAACATCTAAAGCTAATTAGCAGACTTGACAGCCTAAGCAGTGTGGACTACAAGAGTAAAGTAGCAGACAAATACCCCAAGTTGTTCAAGGGACTGGGTGTTATGAAGGACAGTTACTGCATCACACTCCAAGAAGATGCCAAACCTTTTCAAGTAACAGTACCAAGGAAAGTGCCCTTCCCTCTGTATCAGAAAACTAAGGAAGAGTTAGACAGAATGTTGGAGACAGGTGTCATATCCAGAGTTGACCAGCCCACTGATTGGTGTGCTCCTATGGTTGTTACTCCTAAGAGCAATGGGAACGAATGGGTATGGGGAAGTGAGCAACAGAAAGCATTTGAGCAGATCAAAGCTGACCTCACACAAGTCCCAGTACTGGCACTGTACGATCCAAACAAGGAAACCAAAGTGGCAGCTGATGCTTCCTCCTATGGCCTAGGCGGGGTAGTTCTTCAACTCCAACCAGACAACTCCTGGCGACCAGTTTCATTCATATCAAGAGCGATGACTCCCACCGAGACCAGATATGCACAGATAGAAAAAGAAGCCCTAGCACTCACCTGGGCATGCGAACGATCCTGGGAGTACATCGTGGGGAAGTCGATCTCCGTTGAAACTGACCACAAACCCCTGGTGCCACTTCTGAGTACGCACACTCTATACCAACTTCCGCCGCGAATCCAGAGATTCAGAATGCGACTAATGAGATTCCACTTCAAGGAGATCAAGCATGTTCCTGGAAAGAAGATGTACATACCCGATGCGCTTTCAAGACTCCAAGTCCGAAGCCAAGCAGTTCAGTCTACAATTGATGATGACGAAATGCACGCACACATTGGAAGCGTGATCTCATCACTGCCTGCCTCAGACTTCAGCAGATCATGGAAGCACAGGAAGAGGATCCAGTCTGCAGACAGATCAAAGTGTACTGCTATGAAGGATGGCCTGACAAGCATTCCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan