Gene detail

Detailed information of evm.model.Ap10.49 in Astrangia poculata

Genomic Location: Ap10:521868...532899
NR annotation: XP_027057184.1, uncharacterized protein LOC113684076 isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap10.49

atggctaataaatcaagtgagaacgacgtgactgtcccttctgcagcatcaagaggatccaatatcagcgtctcttcaccagcaaaaagtccaggaagaccgttaaatgtggaactcgctcctaaaggagctcaagaatcatgcagctctgccaactgtgcatgtgggacacacaccccacacaaaatcactcagcatagcaaacacgtcacaaattgtaaatctcagaactgctgctgtagccgcgaagtccacatgcctggtatggtctaccagcacgtcacaccagcagtagctaatgttgtgattgatgcatcaaaccccacaacccaggactctaaaactgcgtctaagcatggaggggttcactactgctccagctgtcctcccggaccacatacccatcatgtgtactcgccagctaactgtcatccacagcaacctgcgttcatggatcacgctcattgtggatgccaacctgggtttgttgatgggcattttcacttcccccatcaacagactccacccagacctctcacagtcatggctcatccaccgccactgctcctaagacctgttcagccacagcatatgcaacaacatcaggcaatattggaacaggaacttcgcccttattttgatggcaaatggaaaggccttggagatcctcacctgtctagctatggtggaagaccgcagtcatcagaaggatcagtggcaacaggagcatttattggtgaagcccaagcagcccaacatcatccgctgtttcatcacaatatctgccagtggccaggttgtgaggcattttgtgagaattttcaacaatttctgcatcaccttaattctgaccacgccctggatgaacggagtacagctcaagcaagagttcaaatgcaagttgtaatgcatctggaatttcagatgaacaaagagcgtgaaaggttgtcagcgatgatgaatcacctacatactcctaaggttgctcaacatacgcccaatacaaaccctgacctagaagatgaggaacaccaacacgtgcctcactctcaagcacagcctctacttcatcttgcacctgccccacccccacaccctcacatgccttctctagaagatatcccgccggcgcagcaatctcctactctccagagtagacaggaggtccctatgtcaccagaaagcccgccaccaacaatgggaagcccatgcaggaaacaccctatcaccccaccccccaacatcacagttcatgacatcaccagtccaagtgacatcaccgttgttgcgacgtcatcttgtcacatgatggaagataaaccagttcacgtgaaaagaaggaatggagatcctgacgggatagcactagatatccagcgatcagcagatttttatcagaaggcagatgtccgtcctcccttcacatacgcgtcgctcatcagacaggctattttagacgccccagagcagcagcttacattgaatgagatctactcctggtttattcacaagtttgcttacttcagaagaaatgctgcaacgtggaagaacgctgtccgccataacctgtctcttcacaaatgttttgtgaggaaagagaacgtgaaaggagctgtgtggattgtggacgaagatgaatacatgaaacgacgaccacaatctaaagtcattcatagcacctccaggatgatgaagcaagagcgagaccgcctgatgcaacaaaatgccttagggggactcccaacgcaagtaaacctgcttcctgcagccacttcaaattctaattccaataatgccagcgaggatgaaggctcgagtcaagatgacagccgtaaaagaggctcagactcggacactggggacgagatgccggtccaaaagcgccgagaccttagagacggagaggaagtagagggcgtggtcggtggtatcactaaactggtggagttttgctctaaagatatcaatagccaactgtcccagtctcaagtacaagtgaagctcgagcctccagaagacggaccaatcatagcgcttaacggcgacagtgagtcaggagatgatcattacgattctacaggcatgaacgaggacaccttaatggagactggggccccgaagttaataacggagtgccgcatgagaacgaactacaaccgtcgcacgatgactggagggcaggtggagctgactgcgactgcgcagtga

Transcript

evm.model.Ap10.49

ATGGCTAATAAATCAAGTGAGAACGACGTGACTGTCCCTTCTGCAGCATCAAGAGGATCCAATATCAGCGTCTCTTCACCAGCAAAAAGTCCAGGAAGACCGTTAAATGTGGAACTCGCTCCTAAAGGAGCTCAAGAATCATGCAGCTCTGCCAACTGTGCATGTGGGACACACACCCCACACAAAATCACTCAGCATAGCAAACACGTCACAAATTGTAAATCTCAGAACTGCTGCTGTAGCCGCGAAGTCCACATGCCTGGTATGGTCTACCAGCACGTCACACCAGCAGTAGCTAATGTTGTGATTGATGCATCAAACCCCACAACCCAGGACTCTAAAACTGCGTCTAAGCATGGAGGGGTTCACTACTGCTCCAGCTGTCCTCCCGGACCACATACCCATCATGTGTACTCGCCAGCTAACTGTCATCCACAGCAACCTGCGTTCATGGATCACGCTCATTGTGGATGCCAACCTGGGTTTGTTGATGGGCATTTTCACTTCCCCCATCAACAGACTCCACCCAGACCTCTCACAGTCATGGCTCATCCACCGCCACTGCTCCTAAGACCTGTTCAGCCACAGCATATGCAACAACATCAGGCAATATTGGAACAGGAACTTCGCCCTTATTTTGATGGCAAATGGAAAGGCCTTGGAGATCCTCACCTGTCTAGCTATGGTGGAAGACCGCAGTCATCAGAAGGATCAGTGGCAACAGGAGCATTTATTGGTGAAGCCCAAGCAGCCCAACATCATCCGCTGTTTCATCACAATATCTGCCAGTGGCCAGGTTGTGAGGCATTTTGTGAGAATTTTCAACAATTTCTGCATCACCTTAATTCTGACCACGCCCTGGATGAACGGAGTACAGCTCAAGCAAGAGTTCAAATGCAAGTTGTAATGCATCTGGAATTTCAGATGAACAAAGAGCGTGAAAGGTTGTCAGCGATGATGAATCACCTACATACTCCTAAGGTTGCTCAACATACGCCCAATACAAACCCTGACCTAGAAGATGAGGAACACCAACACGTGCCTCACTCTCAAGCACAGCCTCTACTTCATCTTGCACCTGCCCCACCCCCACACCCTCACATGCCTTCTCTAGAAGATATCCCGCCGGCGCAGCAATCTCCTACTCTCCAGAGTAGACAGGAGGTCCCTATGTCACCAGAAAGCCCGCCACCAACAATGGGAAGCCCATGCAGGAAACACCCTATCACCCCACCCCCCAACATCACAGTTCATGACATCACCAGTCCAAGTGACATCACCGTTGTTGCGACGTCATCTTGTCACATGATGGAAGATAAACCAGTTCACGTGAAAAGAAGGAATGGAGATCCTGACGGGATAGCACTAGATATCCAGCGATCAGCAGATTTTTATCAGAAGGCAGATGTCCGTCCTCCCTTCACATACGCGTCGCTCATCAGACAGGCTATTTTAGACGCCCCAGAGCAGCAGCTTACATTGAATGAGATCTACTCCTGGTTTATTCACAAGTTTGCTTACTTCAGAAGAAATGCTGCAACGTGGAAGAACGCTGTCCGCCATAACCTGTCTCTTCACAAATGTTTTGTGAGGAAAGAGAACGTGAAAGGAGCTGTGTGGATTGTGGACGAAGATGAATACATGAAACGACGACCACAATCTAAAGTCATTCATAGCACCTCCAGGATGATGAAGCAAGAGCGAGACCGCCTGATGCAACAAAATGCCTTAGGGGGACTCCCAACGCAAGTAAACCTGCTTCCTGCAGCCACTTCAAATTCTAATTCCAATAATGCCAGCGAGGATGAAGGCTCGAGTCAAGATGACAGCCGTAAAAGAGGCTCAGACTCGGACACTGGGGACGAGATGCCGGTCCAAAAGCGCCGAGACCTTAGAGACGGAGAGGAAGTAGAGGGCGTGGTCGGTGGTATCACTAAACTGGTGGAGTTTTGCTCTAAAGATATCAATAGCCAACTGTCCCAGTCTCAAGTACAAGTGAAGCTCGAGCCTCCAGAAGACGGACCAATCATAGCGCTTAACGGCGACAGTGAGTCAGGAGATGATCATTACGATTCTACAGGCATGAACGAGGACACCTTAATGGAGACTGGGGCCCCGAAGTTAATAACGGAGTGCCGCATGAGAACGAACTACAACCGTCGCACGATGACTGGAGGGCAGGTGGAGCTGACTGCGACTGCGCAGTGA

Protein

Uniprot

Gene family

Uniprot term	Description
A4IFD2	Forkhead box protein P1 OS=Bos taurus OX=9913 GN=FOXP1 PE=2 SV=1
Q58NQ4	Forkhead box protein P1 OS=Gallus gallus OX=9031 GN=FOXP1 PE=2 SV=1
Q5W1J5	Forkhead box protein P1 OS=Xenopus laevis OX=8355 GN=foxp1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Fork_head

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250	Forkhead	Forkhead domain	Domain	Interproscan
PF16159	FOXP-CC	FOXP coiled-coil domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766	Domain	Fork head domain	Interproscan
IPR032354	Domain	FOXP, coiled-coil domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR047412	Domain	Forkhead box protein P1/P2, forkhead domain	Interproscan
IPR050998	Family	Forkhead box protein P	Interproscan
IPR030456	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45796	FORKHEAD BOX P, ISOFORM C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23582	FOXP1; forkhead box protein P1	-	Transcription factors	ko03000	deepkoala