Gene detail

Detailed information of evm.model.Ap11.235.1.5f15dbca in Astrangia poculata

Genomic Location: Ap11:2944281...2949916
NR annotation: XP_020630368.1, hypoxia-inducible factor 1-alpha-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

evm.model.Ap11.235.1.5f15dbca

ATGACAAACTGGAAATTCTCGCGGGAGGGGGGGGTTACTGGCTTGGGAAATCCTGGCGGGAGGGGGGGTCTGAACCTAAAAAGTCTTCCTCTGGATCACAATTTCCTTGGGGGTCAGAATTTTTTGCCATCCGTCGGGGTGTGTGTATTGTTTCTGGAATAACCCAATATGACATATTGATTGTATATTTATTAATTTTAAATCTCAAATTGTTTTGTTCAGATTTGAAGAAAATTACAACTCTCAATGTGTCAGAAAGAACAGTTTATGACAAGGCATCACTGGAGGCACTAGATGGCTTTGTCTTTGTGGTGACTCCAGATGGTCAGTGCATTTATGTGTCCGATAACATCAACCATTACATGGGACTCTCACAGATCGAAGTAACTGGTAACAGTTTCTACAAATACATTCACCCCTGTGATCACGAGGAGTTATCCAATCAGCTTGGAGGACAGATTCCGCTAGAAGACATGGAAATCTTTGATGGGCTTTTCTGCTCAGATTCTGTGTTCATGATGAGCAACCATCTCAAGGGAGGATCAAAGAATGTTGCTCACGAGAATCCACACAAGTCATTCTTCTTGCGCATGAAAAGCACTTTGACGAGCAGGGGGAAGAATGTCAACCTCCGAGCATCAACCTACAGGGTGGTCCACTGCACTGGCTGCATGAAAATGCAGACTAGAGTATTAGAGTCAGGAGAAGAAGAGCAAGTCCCAATGTTTTTGGTCGGCATTGGAGTGCCACTGATGTTTGGCTCCACATTTGAAGTTCCACTCGATAGAGGAACGTTCACCAGTCGCCACAGCCTTGACATGAATTTCCTGTCATGTGATGAAAGTGTTAAAGACCTGCTTGGTTTCACGCCAGCAGAGATTGTCGGGAAGTCTTGGTACCACTTTCAGCATGCTTGTGACCTGAACACGGCATTAGCCTGCCATAAAACATTGCTAACCAAGGGACAGTCAGTAAGCAAGTACTACCGGTTCTTGGTGCGCAATGGAGGCTGGGTGTGGCTACTGACCAAGGCCAACATAGTTTACGACAGCAAGACTTGTCAGCCACAGTTTGTCTTGTGCACAAATTACATCATCATGAGAGCAGACCAGAAGGACTACATTCTGTCCTCAGAGCAGTTGAACCCAGTACCAGCGCCCTTGGGACTAGACCTGGTGGTGAAAAAAGAAAACGTCAAAGGAAGAGGAACACGAAGAAAGCATTCCATTGTGTTAGAAGAACGCACCAAGCTGCTCAAGGCTGCAGCACATGAGCAGCGCCCAGGTGGAGATATTGTGCCTAAGAAGGAGGTCAATCTTGACACATGCTGCAAGATGGCTTCAACTAAACAGATTGCTAAGAAGTCCTGTCAGTGTTTGGAGGATGTTGACTGCGACCACATGAATTTCCAGGATTGCCTGCCAGTAGCATGGGACACCAATGAAGAGGTTATTGCACAACAACAAAAGTACGAAAAGATGCTACACAGTCACTATGGTGTCATGGAAACCCCCCAGCCCTCGTCCCCAGAAAACAGCACTACTGAAAATAGAATACCGTACTGCCCTTCACCATGTGACGACCAAAACATTAGTGGTGACAAAGAAAAGGAGGCAAACGACGACGAAGAGAACTTTGATGAACGTGCGCCATTCATTCCCTTGTCAATAGTCGACTCCGGGTTGGATTGTGATGACGACTTACTAGTTGAGATTCCATTCATTGATTCACCAATGACACCATCATCATGGCTGCTTAATGCTGACGAGAGCATGCCGTCTCCGGGTAGCGTTTCCATGACCACACCAACTCCAAACAGAGCTACCACTTCATACAGAAGTTTTTCCAACTCCTCTTCACCTGTCATGTCCCGGAAAGGCGTGCCGACAGCTGTGAAACGAAGTGCTTACGTCACTAACGAGGTAGCATCCAAAGGAAAGGGGATCTTTCCAAACATCACTACATGGGATGCCGAGGTCAACGCACCTGTTCAGAACACACTCCTACAGGGAGAGGAGCTACTGAGAGCGCTTGAATGCGCAGACTTTTTGTGA

Protein

Uniprot

Uniprot term	Description
Q9YIB9	Hypoxia-inducible factor 1-alpha OS=Gallus gallus OX=9031 GN=HIF1A PE=2 SV=2
Q309Z6	Hypoxia-inducible factor 1-alpha OS=Eospalax fontanierii baileyi OX=146132 GN=HIF1A PE=2 SV=1
Q0PGG7	Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598	PAS_11	PAS domain	Domain	Interproscan
PF08778	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR014887	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16060	BIRC2_3; baculoviral IAP repeat-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala