Gene detail

Detailed information of evm.model.Ap12.113 in Astrangia poculata

Genomic Location: Ap12:1063721...1077402
NR annotation: XP_020626064.1, tetratricopeptide repeat protein 30A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

evm.model.Ap12.113

AATATTTTGTGTTCATGGGTTAAAATTTTACGAACATTTCTTCCATTTTTACGCTTAATTTTCGTGATGGCGGGTGTGCAAGTCAAAGAGGGAGAATATACAACAACAGTTTATGCAATGATAAAAAATCAGAAGTTCCACGAGGCTATTCAAATCCTATCACAGGAGCTGGAACATCATTCTAAGTCAAGAGCAGCACTCTCTCTGTTAGGCTACTGCTACTTTCAGGTTCAAAGCTTTGATGCCGCAGCTGACTGCTATGGACAGCTGACACAGATACATCCAGAAGTTGATGAATACAAGTTGGCCTATGCTCAGTCTTTGTACAAAGCATTCATGTATCCAGAAGCAATGAAGGCAACATTTCAGATTGAAAATCCTATATACCAATCAAAGGTGCTAAAACTCCAAGCTGCCATAAAATATGGAGAAGAGGACTTACAGGGAGCCAAGAGTATGGTGGAGCAGTGTCCTGCTGATGATCCTGATACAGAAGTCAATCTAGGATGTCTTCTTTACAAGGAGGGGAGATATGCCGAGGCTTGTCAGAAATTCCAGACTGCAATGAATATTCTTGGATATCAACCAGATCTGTCCTACAACATAGCGCTGTGTTTTTACAGCTTGAAGCAGTATGCACCAGCACTGAAACACATTGCTGATATTATCGAGAGAGGAATCAGAGACCACCCAGAATTAAGTGTTGGAATGACAACAGAAGGTATTGAGGTCAGAAGCGTGGGCAACACCAAGGTGTTACATGAAACTGCACTGATTGAAGCATTCAACCTTAAAGCAGGGATTGAATACCAGCTGAAGAACTTTGATTCTGCCCAGGAAGCTCTTACAGATATGCCTCCAAGAGCTGAAGAGGAACTTGACCCAGTAACTTTGCATAACCAAGCCCTTATGAACATGGAGGCAAATCCAACACAGGGATTTGAGAAGTTGCAGTTTTTGTTACAGCAAAATCCATTCCCTCCAGAAACTTTTGGAAATCTGTTGTTACTTTATGCAAAGTATCAGTATTTTGATCTAGCTGCGGATGTGTTGGCTGAGAATGCTCACCTGACGTATAAGTACCTCACACCATACATGTATGACTTTCTGGATGCTATGATCACACAACAAACATCTCCAGAGGAGGCATATCGGAAATTAGATGATATGGCCACAAAACAGACAGAAACCTTGAGGAAACTTACCAAGCAGGTTCAGGAGGCAAGACAAAACCACGATGATGACACTGTGAAGAAAGCTGTCAATGAATATGATGAGGCACTGGAACGGTACATACCTGTGTTGATGTCTCAAGCTAAGATCTATTGGGATCTTGATAATTATGCACAAGTGGAAAAGATATTCAGAAAGTCTGTTGAGTTCTGCAATGAACATGAAGTTTGGAAGCTGAACGTTGCTCACGTACTGTTCATGCAGGAAAATAAATACAAAGAGGCCGTTGGTTTCTACGAACCGATAGTTAAAAAACATTACGACAATATTCTCAGTGTCAGTGCTATAGTGTTGGCGAATCTTTGTGTGTCATACATCATGACCAGCGCTAACGAAGAGGCGGAAGAATTAATGCGAAAAATTGAGAAAGAGGAGGAACAAGTGGCTTATGATGATCCAGATAAGAAGATTTACCATCTTTGTATAGTGAACCTTGTTATTGGCACCTTATATTGTGCCAAGGGAAACTACGAATTTGGAATCTCCCGGATTATGAAGAGCTTGGAACCTTACAATAAAAAGCTTGGTACAGATACATGGTTTTACGCTAAGAGATGCTTTTTGTCGCTTCTGGAGAACATGGCCAAGCATATGATCATGTTGCGGGATAGTGTAATCCAGGACATTATTCAGTTCTTGGAACACTGCGAAGTTTATGGCAAAAGTGTCGCCGCAGTGGTAGAACAGCCCTTAGAAGAAGAAAAAATGCATCCTGGGAAGAACACAGTCACATTTGAAGCCAGAGAATTAAAAAGCTTGTTCATGCGCTTAGTTTAA

Protein

Uniprot

Uniprot term	Description
Q6INU8	Intraflagellar transport protein 70A OS=Xenopus laevis OX=8355 GN=ift70a PE=2 SV=1
A4IHR1	Intraflagellar transport protein 70A OS=Xenopus tropicalis OX=8364 GN=ift70a PE=2 SV=1
A7YE96	Intraflagellar transport protein 70A OS=Danio rerio OX=7955 GN=ift70a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039941	Family	Tetratricopeptide repeat protein 30	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20931	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005879	Cellular Component	axonemal microtubule	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0120170	Molecular Function	intraciliary transport particle B binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19683	TTC30, DYF1; tetratricopeptide repeat protein 30	-	Cilium and associated proteins	ko03037	deepkoala