Gene detail

Detailed information of evm.model.Ap12.1450 in Astrangia poculata

Genomic Location: Ap12:15185638...15235698
NR annotation: XP_022794576.1, nuclear pore complex protein Nup85-like isoform X1 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap12.1450

atggcggccacgaattctccaactacggttattccaggatgtcagaatctcactggatactgggccccaggacatggaatacttgtacatacatgtgatggcagaccaagaacttcccagagttcaacacattacaggtatcctgttttacacgaagtccgttggggagctgactttcagagtgttataactcgcaagctgattaatgagacacatgccatctttatggatctccaacacgttcctgacactgggggtacaggaagaaaagctagcctgatcaagttcagtagaagatatcgaagtgtagtgagagcttgtattcttgacctcgaggagaagtctgcctccagagagcattcaggtgattcaagacatccacattcaactgtatcacagaggcaactgttgacgctaattgaaacagtctggcacctgtgtgagatactgttcatagaaactttaccaggaggagctgttttgcattatctgttggaatgggttcaaaatggacatgccgacaagtatgtcaaggatgtgctgcagcatccacagcctcatgacagtcgttcttattggccagctatctactccttggttcttcaaggacgagtgaatgatgctcgtgaacttcttgtccagcatcctgacagacatgcaggagaatatgatgagtttgcaagcatggatgaacttcttcgtaaaatgcccatgtaccagttgtacatggggcaaagcttggcagaattcagcatgaaatggactcactggcaacaagaatgtaaacatcgtcttgataatgaaacatacacagggcatccacatttacacacaatatgtaagatactctgtggtgaggaagaggtgtttgatgaaatgatcgagtattgcaagacatggtatcacctgcttgtagccaaactgctgtactgtaacccagcaatcaagtcttttgatttacagtaccatactcaggcctgcattgacaagtttggaggaaatgctaatttgcacagttttgacagaattctgttgtctgcttttgaatttgatgtccatgctgtgatcaaggagagcagtgaggctcttggtaactggtggtttgttgcacatctgactgacttgctacagcactgtggacaactggattcacaccacatcagtcaaagcatcagcttgagggagttccttatattagaatacgctgccagcctcatgtcacatcacagtctttggcgtgtggctgtggattacctgctgcagtgtccagtgtatggaagagcacaccttgaagagtacattgaacatctgccccttgaaacagacaagaaggctatgaaggtcctcaggctgtgcgaagacctggaaatgcttgcacaagcccaatctatttgtaaaactatgagtatgaaggcgatgaggagtaatagactgggtgctgctttggcttggtgcctcagatctaaggattctacttttgctgcgtttatctcagaaagatttttgtcagagtactgtaagagcggtggattttcaaacctcgatttgattgacaatcttggatccgctatgcttctcagcgatcggctgacgtttcttgggaaataccgcgaatttcataaaatgtacgaggagggcaagctccaagaagctggtcatttgctgatttctctgctgacatcaaaacttgctccacaaaggttgtggctgacgctgttaacggacactttacctctgttggaacataaagaggtcatcttttccagctcacagacgtacgaactaatgcactgtttggaagaaataaggctttcattcagaaccaaggaatacctggaacatcctgataaggagcccgccgaggagcctttattgagaaccttgacacaaggccctggaacaaagtcagctaagagtacaaaggcaaaagaagacgaagagagagacaagatagacttgatccgcttagctctggcgcgaaacttgtcaagaactattttatga

Transcript

evm.model.Ap12.1450

AACAAGATGGCGGCCACGAATTCTCCAACTACGGTTATTCCAGGATGTCAGAATCTCACTGGATACTGGGCCCCAGGACATGGAATACTTGTACATACATGTGATGGCAGACCAAGAACTTCCCAGAGTTCAACACATTACAGGTATCCTGTTTTACACGAAGTCCGTTGGGGAGCTGACTTTCAGAGTGTTATAACTCGCAAGCTGATTAATGAGACACATGCCATCTTTATGGATCTCCAACACGTTCCTGACACTGGGGGTACAGGAAGAAAAGCTAGCCTGATCAAGTTCAGTAGAAGATATCGAAGTGTAGTGAGAGCTTGTATTCTTGACCTCGAGGAGAAGTCTGCCTCCAGAGAGCATTCAGGTGATTCAAGACATCCACATTCAACTGTATCACAGAGGCAACTGTTGACGCTAATTGAAACAGTCTGGCACCTGTGTGAGATACTGTTCATAGAAACTTTACCAGGAGGAGCTGTTTTGCATTATCTGTTGGAATGGGTTCAAAATGGACATGCCGACAAGTATGTCAAGGATGTGCTGCAGCATCCACAGCCTCATGACAGTCGTTCTTATTGGCCAGCTATCTACTCCTTGGTTCTTCAAGGACGAGTGAATGATGCTCGTGAACTTCTTGTCCAGCATCCTGACAGACATGCAGGAGAATATGATGAGTTTGCAAGCATGGATGAACTTCTTCGTAAAATGCCCATGTACCAGTTGTACATGGGGCAAAGCTTGGCAGAATTCAGCATGAAATGGACTCACTGGCAACAAGAATGTAAACATCGTCTTGATAATGAAACATACACAGGGCATCCACATTTACACACAATATGTAAGATACTCTGTGGTGAGGAAGAGGTGTTTGATGAAATGATCGAGTATTGCAAGACATGGTATCACCTGCTTGTAGCCAAACTGCTGTACTGTAACCCAGCAATCAAGTCTTTTGATTTACAGTACCATACTCAGGCCTGCATTGACAAGTTTGGAGGAAATGCTAATTTGCACAGTTTTGACAGAATTCTGTTGTCTGCTTTTGAATTTGATGTCCATGCTGTGATCAAGGAGAGCAGTGAGGCTCTTGGTAACTGGTGGTTTGTTGCACATCTGACTGACTTGCTACAGCACTGTGGACAACTGGATTCACACCACATCAGTCAAAGCATCAGCTTGAGGGAGTTCCTTATATTAGAATACGCTGCCAGCCTCATGTCACATCACAGTCTTTGGCGTGTGGCTGTGGATTACCTGCTGCAGTGTCCAGTGTATGGAAGAGCACACCTTGAAGAGTACATTGAACATCTGCCCCTTGAAACAGACAAGAAGGCTATGAAGGTCCTCAGGCTGTGCGAAGACCTGGAAATGCTTGCACAAGCCCAATCTATTTGTAAAACTATGAGTATGAAGGCGATGAGGAGTAATAGACTGGGTGCTGCTTTGGCTTGGTGCCTCAGATCTAAGGATTCTACTTTTGCTGCGTTTATCTCAGAAAGATTTTTGTCAGAGTACTGTAAGAGCGGTGGATTTTCAAACCTCGATTTGATTGACAATCTTGGATCCGCTATGCTTCTCAGCGATCGGCTGACGTTTCTTGGGAAATACCGCGAATTTCATAAAATGTACGAGGAGGGCAAGCTCCAAGAAGCTGGTCATTTGCTGATTTCTCTGCTGACATCAAAACTTGCTCCACAAAGGTTGTGGCTGACGCTGTTAACGGACACTTTACCTCTGTTGGAACATAAAGAGGTCATCTTTTCCAGCTCACAGACGTACGAACTAATGCACTGTTTGGAAGAAATAAGGCTTTCATTCAGAACCAAGGAATACCTGGAACATCCTGATAAGGAGCCCGCCGAGGAGCCTTTATTGAGAACCTTGACACAAGGCCCTGGAACAAAGTCAGCTAAGAGTACAAAGGCAAAAGAAGACGAAGAGAGAGACAAGATAGACTTGATCCGCTTAGCTCTGGCGCGAAACTTGTCAAGAACTATTTTATGA

Protein

Uniprot

Uniprot term	Description
Q6DBY0	Nuclear pore complex protein Nup85 OS=Danio rerio OX=7955 GN=nup85 PE=2 SV=1
Q8R480	Nuclear pore complex protein Nup85 OS=Mus musculus OX=10090 GN=Nup85 PE=1 SV=1
Q4QQS8	Nuclear pore complex protein Nup85 OS=Rattus norvegicus OX=10116 GN=Nup85 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07575	Nucleopor_Nup85	Nup85 Nucleoporin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011502	Family	Nucleoporin Nup85-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13373	FROUNT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14304	NUP85; nuclear pore complex protein Nup85	-	Chromosome and associated proteins	ko03036	deepkoala